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Os02g0586800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.27 (0.0194) R2 : 0.327
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.683 (0.0464) R2dC : 0.321 R2C : 0.319
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0847 (0.0407) R2dN8 : 0.00824 R2N8 : 0.00544
σ : 0.365
deviance : 60.92
__
_____
C
peak time of C : 22.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.19 0.326 7.29 0.456 0.702 -0.232 0.266 2.7 0.136 22.6 1.226 309 -- --
51.62 0.335 7.24 0.524 0.633 0.372 0.67 -- 0.138 22.5 5.3 2526 -- --
48.4 0.324 7.29 0.441 0.699 -0.238 -- 2.75 0.135 22.6 1.2 341 -- --
51.04 0.333 7.25 0.651 0.676 0.336 -- -- 0.196 22.7 7.103 4161 -- --
76.89 0.408 7.27 0.575 -- 0.111 -- 2.51 0.124 -- 0.7 357 -- --
53.37 0.342 7.25 0.529 0.682 -- 0.398 -- 0.143 22.7 -- -- -- --
54.01 0.344 7.25 0.512 0.679 -- -- -- 0.142 22.8 -- -- -- --
70.81 0.392 7.24 0.685 -- 0.639 -- -- 0.117 -- 3.3 741 -- --
60.04 0.363 7.27 -- 0.675 -0.315 -- -- 0.0787 22.7 7.103 4161 -- --
82.58 0.425 7.24 0.526 -- -- -- -- 0.146 -- -- -- -- --
60.92 0.365 7.27 -- 0.683 -- -- -- 0.0847 22.8 -- -- -- --
82.62 0.423 7.25 -- -- 0.475 -- -- 0.0626 -- 3 711 -- --
89.87 0.442 7.25 -- -- -- -- -- 0.0875 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.40 radiation 20.0 14400 < th dose independent rect. 24 6
3 46.67 radiation 1.0 1440 < th dose independent rect. 11 1
4 46.67 radiation 1.0 1440 < th dose dependent rect. 11 1
5 46.76 wind 1.0 720 < th dose independent rect. 23 1
6 46.82 humidity 60.0 14400 > th dose independent rect. 24 8
8 47.12 wind 1.0 1440 > th dose independent rect. 23 1
9 47.12 humidity 70.0 14400 < th dose dependent rect. 21 1
18 47.30 radiation 10.0 4320 < th dose dependent rect. 24 5
19 47.31 wind 7.0 4320 > th dose independent rect. 17 2
23 47.45 radiation 1.0 1440 > th dose independent rect. 12 2
24 47.45 radiation 1.0 1440 > th dose independent rect. 9 5
29 47.48 radiation 40.0 14400 < th dose dependent rect. 24 5
34 47.52 radiation 1.0 1440 < th dose independent rect. 13 1
35 47.52 radiation 1.0 1440 < th dose dependent rect. 13 1
37 47.54 radiation 1.0 1440 < th dose independent rect. 9 5
38 47.54 radiation 1.0 1440 < th dose dependent rect. 9 5
39 47.55 atmosphere 1005.0 720 < th dose independent rect. 19 4
48 47.58 wind 9.0 4320 > th dose independent rect. 17 4
50 47.58 wind 7.0 4320 > th dose dependent rect. 17 2
59 47.60 atmosphere 1005.0 720 < th dose independent rect. 18 7
63 47.61 wind 7.0 4320 < th dose independent rect. 17 2
64 47.61 humidity 70.0 14400 > th dose independent rect. 21 9
97 47.78 wind 7.0 4320 < th dose independent rect. 17 4
99 47.78 wind 7.0 4320 > th dose dependent rect. 17 4
103 47.82 atmosphere 1005.0 720 < th dose independent rect. 21 1
109 47.86 atmosphere 1000.0 270 > th dose independent rect. 16 15
116 47.90 wind 7.0 4320 > th dose independent rect. 15 6
123 47.95 temperature 10.0 90 > th dose dependent rect. 22 7
124 47.96 wind 7.0 4320 < th dose independent rect. 15 6
131 48.03 humidity 90.0 720 > th dose dependent rect. 20 3
134 48.05 wind 1.0 270 > th dose independent rect. 6 23
135 48.06 wind 7.0 4320 > th dose independent rect. 15 4
150 48.14 humidity 80.0 4320 < th dose independent rect. 22 1
152 48.14 wind 7.0 4320 > th dose dependent rect. 15 6
153 48.16 humidity 60.0 14400 < th dose independent rect. 6 1
155 48.16 humidity 60.0 14400 < th dose independent rect. 20 1
157 48.16 radiation 20.0 14400 > th dose independent rect. 17 1
213 48.16 humidity 60.0 14400 < th dose dependent rect. 6 1
217 48.16 radiation 20.0 14400 > th dose dependent rect. 17 1
270 48.18 wind 1.0 720 < th dose dependent rect. 23 1
293 48.27 wind 7.0 43200 > th dose independent rect. 17 2
296 48.28 humidity 90.0 720 > th dose dependent rect. 20 1
305 48.31 atmosphere 1005.0 10 < th dose dependent rect. 24 8
331 48.41 wind 7.0 43200 < th dose independent rect. 17 2
333 48.41 humidity 60.0 14400 > th dose independent rect. 20 12
358 48.51 humidity 50.0 14400 > th dose independent rect. 18 6
360 48.52 humidity 90.0 14400 < th dose independent rect. 6 1
363 48.54 wind 5.0 90 < th dose independent rect. 22 7
384 48.61 temperature 25.0 720 > th dose dependent rect. 23 1
391 48.64 wind 1.0 10 > th dose independent rect. 5 18
394 48.65 wind 1.0 270 < th dose independent rect. 3 23
399 48.66 wind 1.0 270 < th dose independent rect. 22 17
401 48.66 temperature 25.0 720 > th dose dependent rect. 21 5
403 48.67 temperature 20.0 90 > th dose independent rect. 23 17
413 48.70 humidity 70.0 14400 > th dose independent rect. 21 5
414 48.70 humidity 80.0 90 > th dose independent rect. 22 7
419 48.71 precipitation 0.1 270 > th dose independent rect. 2 2
422 48.71 precipitation 0.1 270 > th dose dependent rect. 2 2
423 48.71 temperature 25.0 720 > th dose dependent rect. 22 3
434 48.73 humidity 80.0 4320 > th dose independent rect. 22 2
437 48.73 wind 9.0 1440 < th dose independent rect. 24 6
463 48.78 wind 7.0 43200 > th dose dependent rect. 18 2
469 48.78 temperature 10.0 90 > th dose dependent rect. 5 17
470 48.79 wind 7.0 4320 < th dose independent rect. 13 12
474 48.79 wind 9.0 90 < th dose dependent rect. 22 7
526 48.86 wind 1.0 270 < th dose independent rect. 22 22
530 48.87 precipitation 0.1 90 < th dose independent rect. 22 7
534 48.87 precipitation 0.1 90 < th dose dependent rect. 22 7
542 48.89 temperature 10.0 1440 > th dose independent rect. 24 6
545 48.89 temperature 30.0 1440 < th dose independent rect. 24 6
549 48.89 humidity 50.0 1440 > th dose independent rect. 24 6
558 48.89 atmosphere 995.0 1440 > th dose independent rect. 24 6
574 48.89 temperature 10.0 1440 > th dose independent rect. 6 18
607 48.94 wind 1.0 270 > th dose independent no NA NA
610 48.94 wind 1.0 270 < th dose independent rect. 19 20
645 48.95 temperature 15.0 90 > th dose independent rect. 5 17
682 48.98 humidity 90.0 14400 > th dose independent rect. 6 1
690 48.98 radiation 1.0 90 < th dose dependent rect. 22 7
705 49.00 temperature 20.0 270 > th dose independent rect. 20 8
711 49.00 wind 9.0 90 < th dose dependent rect. 22 18
716 49.01 radiation 1.0 90 < th dose independent rect. 22 7
742 49.03 temperature 10.0 90 > th dose independent rect. 22 7
743 49.03 temperature 30.0 90 < th dose independent rect. 22 7
744 49.03 humidity 50.0 90 > th dose independent rect. 22 7
747 49.03 atmosphere 995.0 90 > th dose independent rect. 22 7
757 49.03 atmosphere 1015.0 90 < th dose independent rect. 5 17
759 49.03 wind 1.0 270 < th dose independent rect. 16 23
761 49.04 radiation 1.0 1440 > th dose independent rect. 9 1
764 49.04 atmosphere 1000.0 10 > th dose independent rect. 17 15
765 49.04 atmosphere 995.0 90 > th dose independent rect. 5 17
769 49.05 temperature 20.0 270 > th dose independent sin 9 NA
786 49.07 humidity 60.0 14400 > th dose independent rect. 7 1
790 49.08 wind 7.0 4320 > th dose independent sin 16 NA
795 49.08 wind 9.0 90 < th dose independent rect. 5 17
821 49.10 wind 1.0 270 < th dose independent rect. 6 23
826 49.11 wind 7.0 4320 < th dose independent sin 16 NA
844 49.12 wind 1.0 720 > th dose independent rect. 7 18
852 49.13 radiation 1.0 270 > th dose independent rect. 7 9
870 49.15 wind 1.0 270 < th dose independent rect. 11 23
895 49.18 wind 1.0 270 < th dose independent no NA NA
900 49.19 temperature 25.0 270 > th dose independent rect. 22 7
919 49.20 wind 1.0 270 < th dose independent rect. 22 12
922 49.20 radiation 30.0 270 < th dose independent rect. 16 15
928 49.20 wind 1.0 270 < th dose independent rect. 8 23
929 49.20 wind 1.0 270 < th dose independent rect. 13 23
941 49.21 temperature 10.0 270 > th dose independent rect. 7 9
942 49.21 atmosphere 1015.0 270 < th dose independent rect. 7 9
943 49.21 temperature 10.0 270 > th dose independent rect. 16 15
945 49.21 temperature 20.0 270 > th dose independent rect. 21 16
949 49.21 wind 1.0 270 > th dose independent rect. 20 23
957 49.22 temperature 20.0 270 > th dose independent rect. 20 13
962 49.23 temperature 20.0 30 > th dose independent sin 6 NA
975 49.23 humidity 90.0 270 > th dose dependent rect. 20 10
976 49.24 atmosphere 1005.0 1440 > th dose independent rect. 19 3
979 49.24 wind 9.0 270 < th dose independent rect. 7 9
980 49.24 precipitation 0.1 270 < th dose independent rect. 7 9
983 49.24 wind 9.0 270 < th dose independent rect. 16 15
986 49.24 precipitation 0.1 270 < th dose dependent rect. 7 9
989 49.25 temperature 25.0 270 > th dose independent rect. 23 5
997 49.25 wind 7.0 4320 > th dose dependent sin 16 NA