BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0580500 Os02g0580500|AK108467
(282 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0580500 Similar to Prohibitin 523 e-149
Os04g0462900 Similar to Prohibitin 410 e-115
Os03g0841700 Similar to Prohibitin 266 2e-71
Os07g0262200 Similar to Prohibitin 255 3e-68
Os03g0814600 178 4e-45
Os03g0813200 Similar to Nucleolin 97 1e-20
>Os02g0580500 Similar to Prohibitin
Length = 282
Score = 523 bits (1346), Expect = e-149, Method: Compositional matrix adjust.
Identities = 263/282 (93%), Positives = 263/282 (93%)
Query: 1 MAGGGQAAASLLTKXXXXXXXXXXXXXXXXXXXYTVDGGQRAVIFDRFRGVLPETSSEGT 60
MAGGGQAAASLLTK YTVDGGQRAVIFDRFRGVLPETSSEGT
Sbjct: 1 MAGGGQAAASLLTKLAQAAAGLGIAASAASTALYTVDGGQRAVIFDRFRGVLPETSSEGT 60
Query: 61 HFIVPWLQKPFIFDIRTRPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTSLGLEY 120
HFIVPWLQKPFIFDIRTRPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTSLGLEY
Sbjct: 61 HFIVPWLQKPFIFDIRTRPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTSLGLEY 120
Query: 121 DEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDDVAITHLA 180
DEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDDVAITHLA
Sbjct: 121 DEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDDVAITHLA 180
Query: 181 YGPEFSQAVEKKQVAQQEAERSRFLVARAEQERRAAIVRAEGESEAARLISEATAAAGTG 240
YGPEFSQAVEKKQVAQQEAERSRFLVARAEQERRAAIVRAEGESEAARLISEATAAAGTG
Sbjct: 181 YGPEFSQAVEKKQVAQQEAERSRFLVARAEQERRAAIVRAEGESEAARLISEATAAAGTG 240
Query: 241 LIELRRIEAAKEIAGELARSPNVSYIPAGDSSQMLLGLSGAR 282
LIELRRIEAAKEIAGELARSPNVSYIPAGDSSQMLLGLSGAR
Sbjct: 241 LIELRRIEAAKEIAGELARSPNVSYIPAGDSSQMLLGLSGAR 282
>Os04g0462900 Similar to Prohibitin
Length = 296
Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/281 (75%), Positives = 231/281 (82%), Gaps = 3/281 (1%)
Query: 4 GGQAAASLLTKXXXXXXXXXXXXXXXXXXXYTVDGGQRAVIFDRFRGVLPETSSEGTHFI 63
GG AA S LT YTVDGG+RAVIFDRFRGVLPET EGTHF+
Sbjct: 3 GGPAAVSFLTNIAKAAAGLGAAASLLSASLYTVDGGERAVIFDRFRGVLPETVGEGTHFL 62
Query: 64 VPWLQKPFIFDIRTRPHSFSSTSGTKD-LQMVSLTLRVLARPDIDRLP--DIFTSLGLEY 120
VPWLQKPF+FDIRTRPH+FSS SGTK + V L P +P IFTSLGLEY
Sbjct: 63 VPWLQKPFVFDIRTRPHNFSSNSGTKGPCRWVYPHPSGLLSPPPTSVPFPTIFTSLGLEY 122
Query: 121 DEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDDVAITHLA 180
D+KVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRD+LIRRA EFNI+LDDVAITHL+
Sbjct: 123 DDKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRDALIRRAREFNIILDDVAITHLS 182
Query: 181 YGPEFSQAVEKKQVAQQEAERSRFLVARAEQERRAAIVRAEGESEAARLISEATAAAGTG 240
YG EFSQAVEKKQVAQQEAERS+FLVA+AEQERRAAIVRAEGESE+ARLISEATAAAGTG
Sbjct: 183 YGIEFSQAVEKKQVAQQEAERSKFLVAKAEQERRAAIVRAEGESESARLISEATAAAGTG 242
Query: 241 LIELRRIEAAKEIAGELARSPNVSYIPAGDSSQMLLGLSGA 281
LIELRRIEAA+EIA ELARSPNV+Y+PAGD+ +MLLGL+ A
Sbjct: 243 LIELRRIEAAREIAAELARSPNVAYVPAGDNGRMLLGLNAA 283
>Os03g0841700 Similar to Prohibitin
Length = 290
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 181/245 (73%), Gaps = 4/245 (1%)
Query: 34 YTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTKDLQM 93
Y V+GG RA++F+R G+ + EGTHF++PW ++P I+D+R RP+ STSG++DLQM
Sbjct: 39 YNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQM 98
Query: 94 VSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVS 153
V + LRVL RP ++LP I+ SLG ++E+VLPSI +E LKAVVAQ+NA QL+T+R VS
Sbjct: 99 VRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVS 158
Query: 154 ALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQVAQQEAERSRFLVARAEQER 213
+R L RA+ FNI LDDV+IT L++G EF+ A+E KQVA QEAER++F+V +AEQ++
Sbjct: 159 REIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDK 218
Query: 214 RAAIVRAEGESEAARLISEATAAAGTGLIELRRIEAAKEIAGELARSPNVSYIPAGDSSQ 273
R+AI+RA+GE+++A+LI EA + LR+IEAA+EI+ +A S N Y+ DS
Sbjct: 219 RSAIIRAQGEAKSAQLIGEAI-NNNPAFLALRQIEAAREISHTMASSNNKVYL---DSKD 274
Query: 274 MLLGL 278
+LLGL
Sbjct: 275 LLLGL 279
>Os07g0262200 Similar to Prohibitin
Length = 289
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 119/229 (51%), Positives = 172/229 (75%), Gaps = 1/229 (0%)
Query: 34 YTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTKDLQM 93
Y V+GG RA++F+R +G+ + EGTHF++PW ++P I+D+R RP+ STSG++DLQM
Sbjct: 38 YNVEGGHRAIVFNRIQGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQM 97
Query: 94 VSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVS 153
V + LRVL RP ++LP I+ +LG ++E+VLPSI +E LKAVVAQ+NA QL+T+R VS
Sbjct: 98 VKIGLRVLTRPMPEKLPTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVS 157
Query: 154 ALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQVAQQEAERSRFLVARAEQER 213
+R L RA FNI LDDV+IT L++G EF+ A+E KQVA QEAER++F+V +AEQ++
Sbjct: 158 REIRKILTERARNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDK 217
Query: 214 RAAIVRAEGESEAARLISEATAAAGTGLIELRRIEAAKEIAGELARSPN 262
R+AI+RA+GE+++A LI +A A + LR+IEAA+EI+ ++ S N
Sbjct: 218 RSAIIRAQGEAKSAELIGQAI-ANNPAFLALRQIEAAREISHTMSSSAN 265
>Os03g0814600
Length = 420
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 139/225 (61%), Gaps = 32/225 (14%)
Query: 54 ETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIF 113
E EGT F++ ++P I+D+R RP+ STSG++DLQMV + LRVL RP ++LP I+
Sbjct: 217 EVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTIY 276
Query: 114 TSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDD 173
SLG ++E+VLPSI +E LKAVVAQ+NA QL+T+R VS +R L RA+ FNI LDD
Sbjct: 277 RSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIALDD 336
Query: 174 VAITHLAYGPEFSQAVEKKQVAQQEAERSRFLVARAEQERRAAIVRAEGESEAARLISEA 233
V+IT L++G EF+ A+E KQ GE+++A+LI EA
Sbjct: 337 VSITSLSFGKEFTHAIEAKQ----------------------------GEAKSAQLIGEA 368
Query: 234 TAAAGTGLIELRRIEAAKEIAGELARSPNVSYIPAGDSSQMLLGL 278
+ LR+IEAA+EI+ +ARS N Y+ DS +LLGL
Sbjct: 369 I-NNNPAFLALRQIEAAREISHTMARSNNKVYL---DSKDLLLGL 409
>Os03g0813200 Similar to Nucleolin
Length = 528
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 47/163 (28%)
Query: 56 SSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTS 115
+ E +HF +PW ++ IFD+ RP+ STSG++DLQMV L VL RP LP + S
Sbjct: 338 NPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGVLTRP----LPTKYRS 393
Query: 116 LGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDDVA 175
LG + E+VL S+ +E LKAVVAQ+NA QL+ R
Sbjct: 394 LGDNFCERVLTSLMHETLKAVVAQYNASQLIIPR-------------------------- 427
Query: 176 ITHLAYGPEFSQAVEKKQVAQQEAERSRFLVARAEQERRAAIV 218
+V +QEA+R++F+V +AEQ +R A++
Sbjct: 428 -----------------EVDEQEAQRAKFIVEKAEQHKRKAVI 453
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,123,333
Number of extensions: 298860
Number of successful extensions: 1143
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1137
Number of HSP's successfully gapped: 6
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)