Os02g0580500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Prohibitin.
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Os02g0580500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Prohibitin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.22 | 0.468 | 8.79 | -0.268 | 1.51 | -0.832 | 1.91 | 1.45 | -0.334 | 13 | 10.02 | 1495 | -- | -- |
| 102.25 | 0.471 | 8.79 | -0.154 | 1.48 | -0.822 | 1.73 | -- | -0.32 | 12.9 | 10.94 | 1548 | -- | -- |
| 107.25 | 0.486 | 8.77 | -0.103 | 0.909 | -0.707 | -- | -1.28 | -0.161 | 14 | 10.03 | 1297 | -- | -- |
| 114.52 | 0.498 | 8.79 | -0.146 | 1.47 | -0.749 | -- | -- | -0.302 | 13 | 12.7 | 1554 | -- | -- |
| 127.26 | 0.528 | 8.78 | -0.113 | -- | -1.26 | -- | -1.27 | -0.182 | -- | 10.03 | 1297 | -- | -- |
| 116.21 | 0.505 | 8.75 | -0.133 | 1.63 | -- | 1.56 | -- | -0.152 | 12.9 | -- | -- | -- | -- |
| 126.39 | 0.526 | 8.75 | -0.0756 | 1.63 | -- | -- | -- | -0.143 | 13 | -- | -- | -- | -- |
| 134.51 | 0.543 | 8.78 | -0.102 | -- | -1.3 | -- | -- | -0.169 | -- | 12.7 | 1554 | -- | -- |
| 114.62 | 0.499 | 8.78 | -- | 1.46 | -0.804 | -- | -- | -0.27 | 13 | 10 | 1548 | -- | -- |
| 291.31 | 0.798 | 8.78 | -0.137 | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
| 126.54 | 0.526 | 8.75 | -- | 1.63 | -- | -- | -- | -0.135 | 13 | -- | -- | -- | -- |
| 123.81 | 0.518 | 8.79 | -- | -- | -1.38 | -- | -- | -0.244 | -- | 12.82 | 81 | -- | -- |
| 291.8 | 0.797 | 8.77 | -- | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.64 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 93.90 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 94.23 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 19 | 6 |
| 7 | 95.05 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 21 | 3 |
| 15 | 95.41 | humidity | 80 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 19 | 95.71 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 24 | 95.89 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 23 | 1 |
| 37 | 96.39 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 46 | 96.69 | humidity | 80 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 58 | 97.05 | atmosphere | 1005 | 720 | < th | dose independent | sin | 14 | NA |
| 60 | 97.15 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 75 | 97.54 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 9 |
| 76 | 97.54 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 80 | 97.60 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 86 | 97.64 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 90 | 97.67 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 94 | 97.68 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 95 | 97.68 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 96 | 97.70 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 97 | 97.70 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 111 | 97.85 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 148 | 98.03 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 174 | 98.15 | wind | 7 | 43200 | > th | dose independent | sin | 11 | NA |
| 194 | 98.19 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 202 | 98.24 | wind | 7 | 43200 | < th | dose independent | sin | 11 | NA |
| 203 | 98.24 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 7 |
| 207 | 98.26 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 212 | 98.29 | wind | 7 | 43200 | > th | dose dependent | sin | 11 | NA |
| 217 | 98.32 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 226 | 98.41 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 227 | 98.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 233 | 98.45 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 238 | 98.48 | radiation | 10 | 1440 | < th | dose independent | sin | 19 | NA |
| 254 | 98.57 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 274 | 98.64 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |
| 279 | 98.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 280 | 98.65 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 376 | 98.92 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 380 | 98.92 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 397 | 98.99 | atmosphere | 995 | 43200 | < th | dose independent | sin | 4 | NA |
| 439 | 99.10 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 541 | 99.38 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 624 | 99.51 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 649 | 99.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 657 | 99.55 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 670 | 99.58 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 714 | 99.67 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 732 | 99.70 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 733 | 99.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 737 | 99.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 739 | 99.71 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 763 | 99.75 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 770 | 99.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 813 | 99.81 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 815 | 99.81 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 843 | 99.85 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 932 | 99.94 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 949 | 99.95 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 977 | 99.97 | radiation | 20 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 978 | 99.97 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 996 | 99.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 12 |