Os03g0813200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nucleolin.
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Os03g0813200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nucleolin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.49 | 0.61 | 2.79 | 0.537 | 0.123 | 1.33 | -0.0696 | 2.11 | 0.145 | 3.23 | 18.75 | 4517 | -- | -- |
| 172.58 | 0.612 | 2.71 | 0.832 | 0.138 | 0.82 | -0.18 | -- | 0.239 | 2.55 | 19.1 | 5713 | -- | -- |
| 168.5 | 0.605 | 2.79 | 0.537 | 0.122 | 1.34 | -- | 2.11 | 0.145 | 3.09 | 18.75 | 4517 | -- | -- |
| 172.14 | 0.611 | 2.72 | 0.753 | 0.112 | 0.745 | -- | -- | 0.22 | 2.65 | 19.7 | 4479 | -- | -- |
| 169.36 | 0.606 | 2.79 | 0.542 | -- | 1.33 | -- | 2.09 | 0.147 | -- | 18.74 | 4517 | -- | -- |
| 180.31 | 0.63 | 2.76 | 0.266 | 0.11 | -- | -0.0715 | -- | 0.0171 | 3.01 | -- | -- | -- | -- |
| 180.32 | 0.629 | 2.76 | 0.267 | 0.109 | -- | -- | -- | 0.0175 | 2.84 | -- | -- | -- | -- |
| 172.88 | 0.612 | 2.72 | 0.736 | -- | 0.737 | -- | -- | 0.204 | -- | 19.59 | 4531 | -- | -- |
| 178.35 | 0.625 | 2.75 | -- | 0.0696 | 0.24 | -- | -- | 0.0594 | 5.48 | 22.7 | 4659 | -- | -- |
| 181.01 | 0.629 | 2.76 | 0.272 | -- | -- | -- | -- | 0.0203 | -- | -- | -- | -- | -- |
| 182.21 | 0.631 | 2.76 | -- | 0.114 | -- | -- | -- | -0.0123 | 2.86 | -- | -- | -- | -- |
| 178.08 | 0.624 | 2.75 | -- | -- | 0.262 | -- | -- | 0.0637 | -- | 22.44 | 4658 | -- | -- |
| 182.97 | 0.631 | 2.76 | -- | -- | -- | -- | -- | -0.00986 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.79 | humidity | 80.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 3 | 156.00 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 5 | 156.27 | humidity | 80.0 | 90 | < th | dose independent | rect. | 24 | 3 |
| 7 | 156.28 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 1 | 2 |
| 17 | 157.08 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 18 | 157.10 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 9 |
| 19 | 157.11 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 27 | 157.13 | wind | 7.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 44 | 157.19 | wind | 5.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 47 | 157.19 | wind | 5.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 53 | 157.23 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 55 | 157.23 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 64 | 157.60 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 5 |
| 66 | 157.68 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 3 |
| 79 | 158.37 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 2 |
| 81 | 158.48 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 91 | 158.73 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 4 |
| 221 | 162.57 | wind | 7.0 | 90 | > th | dose dependent | rect. | 19 | 6 |
| 318 | 164.54 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 332 | 165.23 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 18 | 3 |
| 365 | 165.59 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 367 | 165.62 | wind | 7.0 | 270 | > th | dose independent | rect. | 21 | 1 |
| 369 | 165.64 | wind | 7.0 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 403 | 165.87 | humidity | 90.0 | 10 | > th | dose independent | rect. | 24 | 3 |
| 429 | 166.26 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 446 | 166.26 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 475 | 166.36 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 492 | 166.47 | wind | 7.0 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 604 | 167.27 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 655 | 167.84 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 657 | 167.86 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 665 | 167.91 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 695 | 168.09 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 701 | 168.13 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 707 | 168.20 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 732 | 168.40 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 733 | 168.40 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 740 | 168.44 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 24 | 3 |
| 761 | 168.66 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 792 | 168.88 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 798 | 168.90 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 20 | 8 |
| 799 | 168.90 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 20 | 8 |
| 843 | 169.07 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 6 | NA |
| 863 | 169.12 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 873 | 169.15 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 884 | 169.15 | wind | 5.0 | 90 | > th | dose dependent | sin | 11 | NA |
| 918 | 169.27 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 925 | 169.28 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 932 | 169.31 | wind | 1.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 952 | 169.34 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 959 | 169.35 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 960 | 169.35 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 5 |