BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0578800 Os02g0578800|AK070066
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0578800  Protein of unknown function DUF962 family protein   233   6e-62
Os08g0433600  Protein of unknown function DUF962 family protein    92   2e-19

>Os02g0578800 Protein of unknown function DUF962 family protein
          Length = 187

 Score =  233 bits (594), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 125/187 (66%)

Query: 1   MAKPSGGGLLDLEHHFAFYGAYHSNAVNVFIHTLFVWPIXXXXXXXXXXXXXXXXXXXXX 60
           MAKPSGGGLLDLEHHFAFYGAYHSNAVNVFIHTLFVWPI                     
Sbjct: 1   MAKPSGGGLLDLEHHFAFYGAYHSNAVNVFIHTLFVWPIFLTALLLLHLAAPSAHAAAAG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWKVVLVAQLFCWTMQFIG 120
                                                    GWKVVLVAQLFCWTMQFIG
Sbjct: 61  AAVYGAFYLLLDRRAGALAALLCFLCWAASAALAARLGFSAGWKVVLVAQLFCWTMQFIG 120

Query: 121 HGVFEKRAPALLDNLVQAFLMAPFFVLLEALHKFVGYEPYPGFHAKVQKLIDEARKEWED 180
           HGVFEKRAPALLDNLVQAFLMAPFFVLLEALHKFVGYEPYPGFHAKVQKLIDEARKEWED
Sbjct: 121 HGVFEKRAPALLDNLVQAFLMAPFFVLLEALHKFVGYEPYPGFHAKVQKLIDEARKEWED 180

Query: 181 KKAKKMT 187
           KKAKKMT
Sbjct: 181 KKAKKMT 187



>Os08g0433600 Protein of unknown function DUF962 family protein
          Length = 200

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 58/86 (67%), Gaps = 5/86 (5%)

Query: 102 GWKVVLVAQLFCWTMQFIGHGVFEKRAPALLDNLVQAFLMAPFFVLLEALHKFVGYEPYP 161
            WK  L  QLFCWT QF+GHG+FEKR PA+ D L + FLM PF +LL+ L+K  GYEPYP
Sbjct: 115 AWKAALATQLFCWTWQFLGHGLFEKRGPAVGD-LPEVFLMEPFLILLQILNKQFGYEPYP 173

Query: 162 GFHAKVQK----LIDEARKEWEDKKA 183
           GF   V K    ++ E R+E + +KA
Sbjct: 174 GFSKNVDKKMEAILRENREELKQRKA 199



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.142    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,515,163
Number of extensions: 130768
Number of successful extensions: 296
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 3
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)