Os08g0433600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF962 family protein.
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Os08g0433600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF962 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.23 | 0.294 | 13 | 0.189 | 0.115 | -0.717 | -0.756 | 0.966 | 0.145 | 15.4 | 24.5 | 726 | -- | -- |
| 40.52 | 0.296 | 12.9 | 0.491 | 0.183 | -0.639 | -0.863 | -- | 0.254 | 17 | 24.2 | 778 | -- | -- |
| 40.44 | 0.296 | 13 | 0.189 | 0.121 | -0.644 | -- | 0.867 | 0.176 | 18.3 | 24.1 | 632 | -- | -- |
| 42.12 | 0.302 | 12.9 | 0.487 | 0.197 | -0.614 | -- | -- | 0.269 | 17.8 | 24.19 | 782 | -- | -- |
| 40.92 | 0.298 | 13 | 0.168 | -- | -0.686 | -- | 0.92 | 0.14 | -- | 24.24 | 616 | -- | -- |
| 58.77 | 0.359 | 12.9 | 0.713 | 0.306 | -- | -0.408 | -- | 0.512 | 19.5 | -- | -- | -- | -- |
| 59.07 | 0.36 | 12.9 | 0.721 | 0.306 | -- | -- | -- | 0.51 | 20.2 | -- | -- | -- | -- |
| 42.99 | 0.305 | 12.9 | 0.498 | -- | -0.633 | -- | -- | 0.249 | -- | 24.3 | 614 | -- | -- |
| 48.05 | 0.323 | 13 | -- | 0.161 | -0.676 | -- | -- | 0.215 | 17.8 | 24.19 | 778 | -- | -- |
| 64.23 | 0.374 | 12.9 | 0.719 | -- | -- | -- | -- | 0.507 | -- | -- | -- | -- | -- |
| 72.77 | 0.399 | 12.9 | -- | 0.302 | -- | -- | -- | 0.43 | 20.4 | -- | -- | -- | -- |
| 48.73 | 0.325 | 13 | -- | -- | -0.725 | -- | -- | 0.169 | -- | 24.2 | 654 | -- | -- |
| 77.85 | 0.412 | 12.9 | -- | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 5 | 38.91 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 13 | 39.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 21 | 39.27 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 37 | 39.46 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 40 | 39.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 56 | 39.57 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 59 | 39.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 12 |
| 74 | 39.70 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 9 |
| 78 | 39.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 81 | 39.73 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 21 |
| 111 | 39.83 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 18 |
| 151 | 39.95 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 153 | 39.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 209 | 40.11 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 215 | 40.14 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 8 |
| 284 | 40.33 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 23 |
| 371 | 40.54 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 377 | 40.54 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 592 | 40.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 600 | 40.96 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 668 | 41.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 705 | 41.11 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 764 | 41.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 808 | 41.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 869 | 41.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 880 | 41.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 953 | 41.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 998 | 41.60 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 1 |