BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0433600 Os08g0433600|AK067255
         (200 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74440.1  | chr1:27979208-27980371 REVERSE LENGTH=209           99   2e-21
AT1G18720.1  | chr1:6458020-6459658 REVERSE LENGTH=207             97   4e-21

>AT1G74440.1 | chr1:27979208-27980371 REVERSE LENGTH=209
          Length = 208

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 117 KAALATQLFCWTWQFLGHGLFEKRGPAVGD-LPEVFLMEPFLILLQILNKQFGYEPYPGF 175
           K  +A+QL CWT QFLGHGLFEKR PA+ D L + FLM PF +LL++L   FGYEPYPGF
Sbjct: 121 KVGVASQLLCWTGQFLGHGLFEKRAPALLDNLLQAFLMGPFFVLLEVLQSVFGYEPYPGF 180

Query: 176 SKNVDKKMEAILRENRE 192
              VD K+E+ ++E RE
Sbjct: 181 KARVDSKIESGIKEWRE 197



>AT1G18720.1 | chr1:6458020-6459658 REVERSE LENGTH=207
          Length = 206

 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query: 117 KAALATQLFCWTWQFLGHGLFEKRGPAVGD-LPEVFLMEPFLILLQILNKQFGYEPYPGF 175
           K  LA+QL CWT QF+GHG+FEKR PA+ D L + FLM PF +LL++L   FGYEPYPGF
Sbjct: 121 KVGLASQLLCWTGQFVGHGVFEKRAPALLDNLLQAFLMAPFFVLLEVLQSVFGYEPYPGF 180

Query: 176 SKNVDKKMEAILRENREELKQRK 198
              V+ K+E+ ++E R + KQ+K
Sbjct: 181 QARVNAKVESDIKEYRAK-KQKK 202




 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 17 GVLDLEAQFAFFRSQHRHPVNAAAHALLAWPILFTGLLVLH 57
          G+ DLE  FAF+ + H +P+N   H +  WPI F+ LL+LH
Sbjct: 6  GLFDLEKHFAFYGAYHSNPINILIHIIFVWPIFFSVLLLLH 46



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.141    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,662,360
Number of extensions: 83111
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)