Os02g0578800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF962 family protein.
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Os02g0578800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF962 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.41 | 0.232 | 11.2 | 0.994 | 0.8 | -1.07 | 0.242 | -0.139 | 0.278 | 16.3 | 24.95 | 877 | -- | -- |
| 23.9 | 0.228 | 11.2 | 0.952 | 0.809 | -1.08 | 0.212 | -- | 0.286 | 16.4 | 23.95 | 984 | -- | -- |
| 23.76 | 0.227 | 11.2 | 0.998 | 0.816 | -1.18 | -- | -0.411 | 0.306 | 16.5 | 23.48 | 1013 | -- | -- |
| 23.98 | 0.228 | 11.2 | 0.956 | 0.818 | -1.12 | -- | -- | 0.285 | 16.5 | 23.82 | 1005 | -- | -- |
| 39.5 | 0.293 | 11.2 | 0.885 | -- | -1.41 | -- | 0.241 | 0.226 | -- | 31.3 | 326 | -- | -- |
| 40.53 | 0.298 | 11.2 | 1.27 | 0.777 | -- | 0.251 | -- | 0.492 | 17 | -- | -- | -- | -- |
| 40.69 | 0.299 | 11.2 | 1.27 | 0.779 | -- | -- | -- | 0.493 | 17 | -- | -- | -- | -- |
| 39.52 | 0.293 | 11.2 | 0.925 | -- | -1.4 | -- | -- | 0.232 | -- | 31.17 | 326 | -- | -- |
| 32.53 | 0.266 | 11.3 | -- | 0.789 | -1.2 | -- | -- | 0.0999 | 16.9 | 20.59 | 47152 | -- | -- |
| 72.62 | 0.398 | 11.2 | 1.25 | -- | -- | -- | -- | 0.474 | -- | -- | -- | -- | -- |
| 83.44 | 0.427 | 11.2 | -- | 0.757 | -- | -- | -- | 0.352 | 17 | -- | -- | -- | -- |
| 60.39 | 0.362 | 11.3 | -- | -- | -1.71 | -- | -- | 0.0959 | -- | 30.85 | 325 | -- | -- |
| 113.52 | 0.497 | 11.2 | -- | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 18 | 22.36 | temperature | 25 | 720 | < th | dose dependent | sin | 3 | NA |
| 43 | 22.83 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 5 |
| 56 | 23.17 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 14 |
| 58 | 23.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 88 | 23.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 107 | 23.61 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 151 | 23.94 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 13 |
| 197 | 24.16 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 6 |
| 221 | 24.25 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 246 | 24.36 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 252 | 24.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 642 | 25.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 644 | 25.79 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 740 | 26.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 842 | 26.27 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 923 | 26.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |