BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0566900 Os02g0566900|AK068953
         (142 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0566900  Conserved hypothetical protein                      201   2e-52
Os09g0453000  Protein of unknown function UPF0220 family pro...   156   4e-39
Os08g0469200                                                       66   1e-11

>Os02g0566900 Conserved hypothetical protein
          Length = 142

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/108 (90%), Positives = 98/108 (90%)

Query: 35  CSAAAVPFLHYLPGLFASFAALMFNCVKREDANYNYYSPYDDSEWRLKLWLXXXXXXXXX 94
           CSAAAVPFLHYLPGLFASFAALMFNCVKREDANYNYYSPYDDSEWRLKLWL         
Sbjct: 35  CSAAAVPFLHYLPGLFASFAALMFNCVKREDANYNYYSPYDDSEWRLKLWLFVSYVVSFV 94

Query: 95  XLAGAVGFLVQDALTDTGPSAWTGVAGVLQSVFVLISGLMYWTCHSED 142
            LAGAVGFLVQDALTDTGPSAWTGVAGVLQSVFVLISGLMYWTCHSED
Sbjct: 95  SLAGAVGFLVQDALTDTGPSAWTGVAGVLQSVFVLISGLMYWTCHSED 142



>Os09g0453000 Protein of unknown function UPF0220 family protein
          Length = 141

 Score =  156 bits (395), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 85/109 (77%), Gaps = 1/109 (0%)

Query: 35  CSAAAVPFLHYLPGLFASFAALMFNCVKREDANYNYYSPY-DDSEWRLKLWLXXXXXXXX 93
           CS+  V FLHYLPG+FAS AALMFN V +++  Y+YYSPY DDSEWR+KLWL        
Sbjct: 33  CSSVQVSFLHYLPGIFASLAALMFNAVNKDEIGYDYYSPYGDDSEWRVKLWLFVAYVVSF 92

Query: 94  XXLAGAVGFLVQDALTDTGPSAWTGVAGVLQSVFVLISGLMYWTCHSED 142
             LAG+VG LVQDALTD GPS WTGVAGVLQ V VLISGL+YWTCHSED
Sbjct: 93  VCLAGSVGMLVQDALTDKGPSVWTGVAGVLQCVLVLISGLIYWTCHSED 141



>Os08g0469200 
          Length = 107

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 48/99 (48%), Gaps = 31/99 (31%)

Query: 35  CSAAAVPFLHYLPGLFASFAALMFNCVKREDANYNYYSPYDDSEWRLKLWLXXXXXXXXX 94
           CSA  V FLHYLP     F       +K  +A                            
Sbjct: 33  CSAVQVSFLHYLPADIIIF-------IKSSEA------------------------LALC 61

Query: 95  XLAGAVGFLVQDALTDTGPSAWTGVAGVLQSVFVLISGL 133
            +AGAVG LVQDALTD GPS WTGVAGVLQ V VLISG+
Sbjct: 62  GIAGAVGLLVQDALTDKGPSVWTGVAGVLQCVLVLISGV 100



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,619,159
Number of extensions: 115344
Number of successful extensions: 246
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 3
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 151 (62.8 bits)