BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0566700 Os02g0566700|AK102754
         (657 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0566700  Conserved hypothetical protein                     1118   0.0  
Os04g0448200  Conserved hypothetical protein                      310   2e-84

>Os02g0566700 Conserved hypothetical protein
          Length = 657

 Score = 1118 bits (2892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/657 (86%), Positives = 569/657 (86%)

Query: 1   MEQDLPALKPQWLVQGQVTTTGAANLWTVASPRPGPDNQXXXXXXXXXXXXXXXXDQNXX 60
           MEQDLPALKPQWLVQGQVTTTGAANLWTVASPRPGPDNQ                DQN  
Sbjct: 1   MEQDLPALKPQWLVQGQVTTTGAANLWTVASPRPGPDNQGRGGSSRNHSSSGHHRDQNSR 60

Query: 61  XXXXXXXXNGPRKHDRDRDGMGKSRGYASFGRNREREREKEFDSRDRESRSITADGFGSF 120
                   NGPRKHDRDRDGMGKSRGYASFGRNREREREKEFDSRDRESRSITADGFGSF
Sbjct: 61  TSSSRISSNGPRKHDRDRDGMGKSRGYASFGRNREREREKEFDSRDRESRSITADGFGSF 120

Query: 121 STCRPERDRLNRSRSRTDSWNKGVVSPNNCNTSRNNTGTGGSFEREFPQLPFDDKRQDIN 180
           STCRPERDRLNRSRSRTDSWNKGVVSPNNCNTSRNNTGTGGSFEREFPQLPFDDKRQDIN
Sbjct: 121 STCRPERDRLNRSRSRTDSWNKGVVSPNNCNTSRNNTGTGGSFEREFPQLPFDDKRQDIN 180

Query: 181 RVPSPASPIQRTVAPDRWNSLLADVPGSSEPKKNLGVSSVLRPAPSKQPEAAPNSGISLS 240
           RVPSPASPIQRTVAPDRWNSLLADVPGSSEPKKNLGVSSVLRPAPSKQPEAAPNSGISLS
Sbjct: 181 RVPSPASPIQRTVAPDRWNSLLADVPGSSEPKKNLGVSSVLRPAPSKQPEAAPNSGISLS 240

Query: 241 MAETVMQVPLSVGPQLSMEAQKMEEISLRQNTLRPMTSPAIKSSVTNSSKTKGVRNGDPS 300
           MAETVMQVPLSVGPQLSMEAQKMEEISLRQNTLRPMTSPAIKSSVTNSSKTKGVRNGDPS
Sbjct: 241 MAETVMQVPLSVGPQLSMEAQKMEEISLRQNTLRPMTSPAIKSSVTNSSKTKGVRNGDPS 300

Query: 301 GPIKAHQSLIPSTNGSARAPVKTDLSKVSHAGNLKILTREQNCTIHTAKDCPDNXXXXXX 360
           GPIKAHQSLIPSTNGSARAPVKTDLSKVSHAGNLKILTREQNCTIHTAKDCPDN      
Sbjct: 301 GPIKAHQSLIPSTNGSARAPVKTDLSKVSHAGNLKILTREQNCTIHTAKDCPDNPMSPPP 360

Query: 361 XXXXXXXXLKKPCVSQKLKVATHDIPLSILQSAYVDKKLNARDKHRFFESLRIKXXXXXX 420
                   LKKPCVSQKLKVATHDIPLSILQSAYVDKKLNARDKHRFFESLRIK      
Sbjct: 361 APVASVEPLKKPCVSQKLKVATHDIPLSILQSAYVDKKLNARDKHRFFESLRIKSSNGSS 420

Query: 421 XXXXXGCPSPSSVADVKQDSCLNVGKDVSLYHSGKDISLYHSGTKCMGNGKCSCEEANSS 480
                GCPSPSSVADVKQDSCLNVGKDVSLYHSGKDISLYHSGTKCMGNGKCSCEEANSS
Sbjct: 421 STAESGCPSPSSVADVKQDSCLNVGKDVSLYHSGKDISLYHSGTKCMGNGKCSCEEANSS 480

Query: 481 DGSQRHLSDNENNSSLDHTADGVSQNLLVEXXXXXXXXXXDRGDEFRVFLSNNTEGXXXX 540
           DGSQRHLSDNENNSSLDHTADGVSQNLLVE          DRGDEFRVFLSNNTEG    
Sbjct: 481 DGSQRHLSDNENNSSLDHTADGVSQNLLVESRSISSSEPSDRGDEFRVFLSNNTEGSSSS 540

Query: 541 XXXXXXXGYKRXXXXXXXXXXXXXXXXPGDEEHPAEDSLPADFVAFMISLGWEKDKKVEP 600
                  GYKR                PGDEEHPAEDSLPADFVAFMISLGWEKDKKVEP
Sbjct: 541 APADSDDGYKRSQSGSEEASSSSETTEPGDEEHPAEDSLPADFVAFMISLGWEKDKKVEP 600

Query: 601 LGLEEIAVTVRANEELEQKLLSMEDNANIKIVLLYIYSGRGLDKELMKPNAGDKNNA 657
           LGLEEIAVTVRANEELEQKLLSMEDNANIKIVLLYIYSGRGLDKELMKPNAGDKNNA
Sbjct: 601 LGLEEIAVTVRANEELEQKLLSMEDNANIKIVLLYIYSGRGLDKELMKPNAGDKNNA 657



>Os04g0448200 Conserved hypothetical protein
          Length = 635

 Score =  310 bits (794), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 242/643 (37%), Positives = 329/643 (51%), Gaps = 52/643 (8%)

Query: 1   MEQDLPALKPQWLVQGQVTTTGAANLWT-VASPRPGPDNQXXXXXXXXXXXXXXXXDQNX 59
           M++  P+LKP+WLV+G      A +LWT  +SPR   D                      
Sbjct: 1   MDRGEPSLKPEWLVRGH-GAVAATSLWTGTSSPR-ADDQGRSISSRNQSSGRDRERSSQQ 58

Query: 60  XXXXXXXXXNGPRKHDRDRDGMGKSRGYASFGR-NREREREKEFDSRDRESR-----SIT 113
                     GPR+HDRD  G  KSRGYASFGR NR+R  EK+ +SR+ ESR        
Sbjct: 59  SISRRSSGSIGPRRHDRD--GTAKSRGYASFGRSNRDRGGEKDSESRNWESRLGPPDDPL 116

Query: 114 ADGFGSFSTCRPERDRLNRSRSRTDSWNKGVVSP--NNCNTSRNNTGTGGSFEREFPQLP 171
            DGF  FS+CRPERDRLN +R + D+ N+ V     N   +       G SFEREFP L 
Sbjct: 117 YDGFKPFSSCRPERDRLNHTRLKVDTLNQAVGESLDNGVRSVSRKVSGGVSFEREFPHLG 176

Query: 172 FDDK--RQDINRVPSP--ASPIQRT---VAPDRWNSLLADVPGSSEPKKNLGVSSVLRPA 224
            DDK  +QD+ RVPSP  ++PIQ      A D  +S+LA+VP  S P      SS+LR  
Sbjct: 177 SDDKNGKQDVGRVPSPGISTPIQSMPLGTALDGRSSVLAEVPVLSGPTNCPVPSSLLRTG 236

Query: 225 PSKQPEAAPNSGISLSMAETVMQVPLSVG--PQLSMEAQKMEEISLRQNTLRPMT---SP 279
            SKQ E  PN G +LSMAETVMQ PL +   PQLS++  K+EE +++Q  LRP T   + 
Sbjct: 237 SSKQMEV-PNCGTALSMAETVMQAPLKISTTPQLSIDTHKIEERTMKQCILRPRTPSSNK 295

Query: 280 AIKSSVTNSSKTKGVRNGDPSGPIKAHQSLIPSTNGS-ARAPVKTDLSKVSHAGNLKILT 338
              SS ++  K+KG R GD +GP+K    L    +GS  RAPVK +L K + +G+ ++L+
Sbjct: 296 ISVSSSSDKLKSKGARAGDSNGPVKGTMQLPLQLSGSFIRAPVKHELVKPTQSGSFQVLS 355

Query: 339 REQNCTIHTAKDCPDNXXXXXXXXXXXXXXLKKPCVSQKLKVATHDIPLSILQSAYVDKK 398
           REQN T++TAK+   N              L+KP V+QKLK   + +PL  LQ ++ ++K
Sbjct: 356 REQNGTVNTAKESTSNPASPVLGRSYSVEPLRKPIVNQKLKGVANGLPLQ-LQGSFGERK 414

Query: 399 LNARDKHRFFESLRIKXXXXXXXXXXXGCPSPSSVADVKQDSCLNVGKDVSLYHSGKDIS 458
            +A+DKH+FFE LR K                S++ D + +SCL                
Sbjct: 415 SSAKDKHKFFELLRSKSLNGSCTSTVSS----STLLDEQNNSCLE--------------- 455

Query: 459 LYHSGTKCMGNGKCSCEEANSSDGSQRHLSDNENNS----SLDHTADGVSQNLLVEXXXX 514
           L+ SG KCM +G  SCEEANS +GSQ+HLSDNE  +      D   +G+ + L       
Sbjct: 456 LFDSGVKCMEHGSSSCEEANSCEGSQQHLSDNEEINPPWEPHDVFDEGMQEVLSDNRDFN 515

Query: 515 XXXXXXDRGDEFRVFLSNNTEGXXXXXXXXXXXGYKRXXXXXXXXXXXXXXXXPGDEE-H 573
                 D  D +    +NN              G                    G+EE +
Sbjct: 516 SSSEIADTQDVYMKPHTNNAGSSPSIIPAEIYDGSMGSNCSDDETVMLFEPIGTGEEESY 575

Query: 574 PAEDSLPADFVAFMISLGWEKDKKVEPLGLEEIAVTVRANEEL 616
           PA+D    + +AF++SLGW++D+ V PL  EEIA  V  +  L
Sbjct: 576 PAQDRPSPEEMAFLVSLGWKEDEIVPPLKQEEIADCVSVSYVL 618



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.128    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,892,933
Number of extensions: 864761
Number of successful extensions: 2185
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2165
Number of HSP's successfully gapped: 2
Length of query: 657
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 550
Effective length of database: 11,448,903
Effective search space: 6296896650
Effective search space used: 6296896650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)