Os02g0566700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0566700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35 | 0.278 | 10.4 | 0.178 | 0.373 | -0.64 | -0.0175 | -0.258 | -0.19 | 12.4 | 28.8 | 4811 | -- | -- |
| 35.04 | 0.276 | 10.4 | 0.122 | 0.36 | -0.655 | -0.0286 | -- | -0.193 | 12.4 | 28.79 | 4810 | -- | -- |
| 35 | 0.276 | 10.4 | 0.178 | 0.373 | -0.64 | -- | -0.259 | -0.19 | 12.4 | 28.8 | 4811 | -- | -- |
| 35.04 | 0.276 | 10.4 | 0.122 | 0.362 | -0.659 | -- | -- | -0.196 | 12.4 | 28.8 | 4811 | -- | -- |
| 43.4 | 0.307 | 10.4 | 0.0406 | -- | -0.659 | -- | 0.196 | -0.224 | -- | 28.6 | 4715 | -- | -- |
| 50.63 | 0.334 | 10.4 | 0.314 | 0.354 | -- | -0.0605 | -- | -0.16 | 12.9 | -- | -- | -- | -- |
| 50.64 | 0.333 | 10.4 | 0.312 | 0.354 | -- | -- | -- | -0.16 | 13 | -- | -- | -- | -- |
| 43.38 | 0.307 | 10.4 | 0.0882 | -- | -0.66 | -- | -- | -0.226 | -- | 28.4 | 4715 | -- | -- |
| 35.25 | 0.277 | 10.4 | -- | 0.359 | -0.691 | -- | -- | -0.217 | 12.4 | 28.58 | 4772 | -- | -- |
| 58.47 | 0.357 | 10.4 | 0.299 | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
| 53.22 | 0.341 | 10.4 | -- | 0.349 | -- | -- | -- | -0.195 | 12.9 | -- | -- | -- | -- |
| 43.57 | 0.307 | 10.4 | -- | -- | -0.681 | -- | -- | -0.228 | -- | 28.4 | 4715 | -- | -- |
| 60.83 | 0.364 | 10.4 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.37 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 2 | 35.48 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 3 | 35.60 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 8 |
| 10 | 35.85 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 15 | 35.90 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 53 | 36.38 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 59 | 36.44 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 69 | 36.48 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 73 | 36.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 97 | 36.63 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 102 | 36.66 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 134 | 36.83 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 146 | 36.87 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 167 | 36.95 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 180 | 36.99 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 184 | 37.00 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 187 | 37.01 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 203 | 37.07 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 206 | 37.08 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 220 | 37.11 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 241 | 37.15 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 247 | 37.16 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 256 | 37.17 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 21 |
| 279 | 37.21 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 281 | 37.21 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 289 | 37.22 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 291 | 37.22 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 296 | 37.22 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 314 | 37.24 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 369 | 37.29 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 15 |
| 438 | 37.36 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 479 | 37.39 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 6 |
| 496 | 37.42 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 504 | 37.43 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 507 | 37.43 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 16 |
| 517 | 37.44 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 533 | 37.45 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 607 | 37.54 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 698 | 37.59 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 700 | 37.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 768 | 37.64 | temperature | 30.0 | 4320 | < th | dose independent | sin | 3 | NA |
| 769 | 37.64 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 802 | 37.64 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 856 | 37.68 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 891 | 37.70 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 912 | 37.72 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 929 | 37.74 | temperature | 30.0 | 4320 | > th | dose independent | sin | 3 | NA |
| 971 | 37.77 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 9 | 15 |