Os04g0448200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0448200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.89 | 0.225 | 10.8 | 0.382 | 0.55 | 0.659 | -0.886 | 0.322 | -0.187 | 9.29 | 21.8 | 6 | -- | -- |
| 22.97 | 0.223 | 10.8 | 0.324 | 0.552 | 0.692 | -0.846 | -- | -0.206 | 9.21 | 21.93 | 9 | -- | -- |
| 25.46 | 0.237 | 10.8 | 0.264 | 0.553 | 0.682 | -- | -0.248 | -0.21 | 9.34 | 22.23 | 18 | -- | -- |
| 25.48 | 0.235 | 10.8 | 0.298 | 0.554 | 0.682 | -- | -- | -0.202 | 9.33 | 22.12 | 7 | -- | -- |
| 41.78 | 0.301 | 10.8 | 0.19 | -- | 0.917 | -- | -0.305 | -0.255 | -- | 18.65 | 5 | -- | -- |
| 30.91 | 0.261 | 10.8 | 0.46 | 0.656 | -- | -0.632 | -- | -0.0913 | 10.7 | -- | -- | -- | -- |
| 32.52 | 0.267 | 10.8 | 0.435 | 0.658 | -- | -- | -- | -0.0924 | 10.9 | -- | -- | -- | -- |
| 41.81 | 0.301 | 10.8 | 0.242 | -- | 0.93 | -- | -- | -0.25 | -- | 18.47 | 2 | -- | -- |
| 27.52 | 0.244 | 10.8 | -- | 0.536 | 0.807 | -- | -- | -0.266 | 9.09 | 18.92 | 12 | -- | -- |
| 59.35 | 0.36 | 10.8 | 0.421 | -- | -- | -- | -- | -0.0967 | -- | -- | -- | -- | -- |
| 37.52 | 0.287 | 10.8 | -- | 0.654 | -- | -- | -- | -0.141 | 10.8 | -- | -- | -- | -- |
| 43.2 | 0.306 | 10.8 | -- | -- | 0.99 | -- | -- | -0.277 | -- | 18 | 2 | -- | -- |
| 64.04 | 0.374 | 10.8 | -- | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 2 | 21.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 16 | 22.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 28 | 22.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 65 | 22.97 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 70 | 22.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 75 | 23.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 85 | 23.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 97 | 23.10 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 98 | 23.11 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 19 |
| 136 | 23.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 147 | 23.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 152 | 23.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 156 | 23.42 | temperature | 20 | 10 | > th | dose dependent | sin | 1 | NA |
| 167 | 23.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 176 | 23.49 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 178 | 23.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 194 | 23.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 210 | 23.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 290 | 23.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 312 | 23.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 314 | 23.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 362 | 23.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 377 | 23.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 385 | 23.88 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 403 | 23.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 418 | 23.93 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 425 | 23.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 448 | 23.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 551 | 24.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 648 | 24.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 723 | 24.34 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 16 |
| 751 | 24.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 765 | 24.39 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 819 | 24.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 820 | 24.45 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |
| 899 | 24.53 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 23 |
| 907 | 24.54 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 925 | 24.56 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 23 |
| 960 | 24.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 971 | 24.61 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 23 |