BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0553600 Os02g0553600|AK072440
         (101 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0553600  Similar to RNA polymerase II transcriptional c...   201   9e-53
Os01g0706000  Similar to RNA polymerase II transcriptional c...    69   6e-13

>Os02g0553600 Similar to RNA polymerase II transcriptional coactivator KIWI
          Length = 101

 Score =  201 bits (511), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MWRKGNKRFGGGGEPAAKRRAAGDDGPSESADDDIVVAQISKNRRVAVRTWNGKVVVDIR 60
           MWRKGNKRFGGGGEPAAKRRAAGDDGPSESADDDIVVAQISKNRRVAVRTWNGKVVVDIR
Sbjct: 1   MWRKGNKRFGGGGEPAAKRRAAGDDGPSESADDDIVVAQISKNRRVAVRTWNGKVVVDIR 60

Query: 61  EFYEKDGKTLPGRKGIQLPMDQWKILRDNIKAIDEAIKENA 101
           EFYEKDGKTLPGRKGIQLPMDQWKILRDNIKAIDEAIKENA
Sbjct: 61  EFYEKDGKTLPGRKGIQLPMDQWKILRDNIKAIDEAIKENA 101



>Os01g0706000 Similar to RNA polymerase II transcriptional coactivator KELP
          Length = 184

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 34  DIVVAQISKNRRVAVRTWNGKVVVDIREFYEKDGKTLPGRKGIQLPMDQWKILRDNIKAI 93
           D+++ ++S  RRV ++ + GK ++ IRE+Y KDGK LP  KGI L ++QW+  RD++ AI
Sbjct: 114 DLILCRLSARRRVTLQEFKGKTLLSIREYYFKDGKELPA-KGISLTVEQWEAFRDSVPAI 172

Query: 94  DEAIK 98
           ++AIK
Sbjct: 173 EDAIK 177



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,233,343
Number of extensions: 174209
Number of successful extensions: 916
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 2
Length of query: 101
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 32
Effective length of database: 13,433,035
Effective search space: 429857120
Effective search space used: 429857120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)