Os02g0553600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA polymerase II transcriptional coactivator KIWI.
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Os02g0553600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA polymerase II transcriptional coactivator KIWI.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.02 | 0.266 | 12.1 | -0.417 | 0.657 | 1.38 | -0.0279 | -0.833 | -0.151 | 18.6 | 9.948 | 87 | -- | -- |
| 32.56 | 0.266 | 12.1 | -0.3 | 0.653 | 1.37 | -0.103 | -- | -0.118 | 18.6 | 10.29 | 86 | -- | -- |
| 32.02 | 0.264 | 12.1 | -0.417 | 0.657 | 1.38 | -- | -0.84 | -0.151 | 18.6 | 9.969 | 86 | -- | -- |
| 32.58 | 0.266 | 12.1 | -0.299 | 0.653 | 1.37 | -- | -- | -0.118 | 18.7 | 10.79 | 86 | -- | -- |
| 46.95 | 0.319 | 12.1 | -0.545 | -- | 1.84 | -- | -0.81 | -0.228 | -- | 2.788 | 263 | -- | -- |
| 50.98 | 0.335 | 12 | -0.0179 | 0.938 | -- | 0.0188 | -- | 0.0745 | 17.4 | -- | -- | -- | -- |
| 50.98 | 0.334 | 12 | -0.0179 | 0.938 | -- | -- | -- | 0.0745 | 17.4 | -- | -- | -- | -- |
| 47.42 | 0.321 | 12.1 | -0.42 | -- | 1.82 | -- | -- | -0.194 | -- | 9.799 | 262 | -- | -- |
| 34.7 | 0.274 | 12.1 | -- | 0.683 | 1.22 | -- | -- | -0.0676 | 18.4 | 11.99 | 85 | -- | -- |
| 96.82 | 0.46 | 12 | -0.0499 | -- | -- | -- | -- | 0.0513 | -- | -- | -- | -- | -- |
| 50.98 | 0.334 | 12 | -- | 0.938 | -- | -- | -- | 0.0765 | 17.4 | -- | -- | -- | -- |
| 51.76 | 0.335 | 12.1 | -- | -- | 1.68 | -- | -- | -0.131 | -- | 8.152 | 256 | -- | -- |
| 96.89 | 0.459 | 12 | -- | -- | -- | -- | -- | 0.0568 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 10 | 31.58 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 14 | 31.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 17 | 32.02 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 30 | 32.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 33 | 32.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 46 | 32.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 52 | 32.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 56 | 32.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 58 | 32.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 65 | 32.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 70 | 32.77 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 80 | 32.93 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 97 | 33.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 98 | 33.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 134 | 33.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 146 | 33.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 191 | 33.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 222 | 34.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 223 | 34.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 281 | 34.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 296 | 34.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 339 | 34.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 370 | 35.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 376 | 35.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 381 | 35.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 400 | 35.26 | temperature | 10 | 10 | > th | dose dependent | sin | 20 | NA |
| 409 | 35.31 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 413 | 35.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 489 | 35.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 514 | 35.67 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 539 | 35.71 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 581 | 35.77 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 599 | 35.81 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 608 | 35.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 658 | 35.89 | temperature | 30 | 10 | < th | dose dependent | sin | 20 | NA |
| 875 | 36.14 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |