BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0553600 Os02g0553600|AK072440
         (101 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09250.1  | chr5:2875421-2876368 REVERSE LENGTH=108             96   3e-21
AT4G10920.1  | chr4:6697894-6699103 REVERSE LENGTH=166             70   2e-13
AT5G09240.2  | chr5:2873893-2874780 REVERSE LENGTH=139             54   2e-08

>AT5G09250.1 | chr5:2875421-2876368 REVERSE LENGTH=108
          Length = 107

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 60/85 (70%), Gaps = 3/85 (3%)

Query: 15  PAAKRRAAGDDGPSESADDDIVVAQISKNRRVAVRTWNGKVVVDIREFYEKDGKTLPGRK 74
           PA K     DD       DDIVV  ISKNRRV+VR WNGK+ +DIREFY KDGKTLPG+K
Sbjct: 24  PAKKVAKPADDSDQS---DDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKK 80

Query: 75  GIQLPMDQWKILRDNIKAIDEAIKE 99
           GI L +DQW  LR++ + I++A+ +
Sbjct: 81  GISLSVDQWNTLRNHAEDIEKALSD 105



>AT4G10920.1 | chr4:6697894-6699103 REVERSE LENGTH=166
          Length = 165

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 26  GPSESADD-DIVVAQISKNRRVAVRTWNGKVVVDIREFYEKDGKTLPGRKGIQLPMDQWK 84
           G  E  DD D+++ ++S  RRV ++ + GK +V IRE+Y+KDGK LP  KGI L  +QW 
Sbjct: 86  GNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWS 145

Query: 85  ILRDNIKAIDEAIK 98
             + N+ AI+ A+K
Sbjct: 146 TFKKNMPAIENAVK 159



>AT5G09240.2 | chr5:2873893-2874780 REVERSE LENGTH=139
          Length = 138

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 2/52 (3%)

Query: 33 DDIVVAQISKNRRVAVRTWNGKVVVDIREFYEKDGKTLP--GRKGIQLPMDQ 82
          +DI +  + KNRRV VR  NG++ + IR+F+ KDG TLP   ++GI L ++Q
Sbjct: 38 EDIFICNLDKNRRVFVRNCNGRIWIAIRQFFVKDGITLPCNSKQGISLSLEQ 89



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,472,036
Number of extensions: 95590
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)