Os01g0706000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA polymerase II transcriptional coactivator KELP.
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Os01g0706000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA polymerase II transcriptional coactivator KELP.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.35 | 0.201 | 10 | -1.09 | 0.0132 | -55.2 | -0.594 | -114 | -0.0531 | 3.25 | 15.01 | 4954 | -- | -- |
| 19.3 | 0.206 | 10.8 | 0.678 | 0.014 | -0.96 | -0.601 | -- | -0.0145 | 2.91 | 15.01 | 4954 | -- | -- |
| 19.29 | 0.205 | 10 | -1.09 | 0.0138 | -55.2 | -- | -114 | -0.0559 | 7.44 | 15.01 | 5523 | -- | -- |
| 19.74 | 0.207 | 10.8 | 0.554 | 0.0306 | -0.612 | -- | -- | -0.0474 | 12.1 | 16.55 | 6336 | -- | -- |
| 19.3 | 0.205 | 10 | -1.07 | -- | -55.2 | -- | -114 | -0.0494 | -- | 15.01 | 5483 | -- | -- |
| 21.03 | 0.215 | 10.8 | 0.719 | 0.00559 | -- | -0.52 | -- | -0.00435 | 3.45 | -- | -- | -- | -- |
| 21.83 | 0.219 | 10.8 | 0.728 | 0.0291 | -- | -- | -- | -0.00149 | 8.69 | -- | -- | -- | -- |
| 19.73 | 0.207 | 10.8 | 0.554 | -- | -0.598 | -- | -- | -0.0479 | -- | 16.7 | 6872 | -- | -- |
| 22.36 | 0.22 | 10.8 | -- | 0.0235 | -0.781 | -- | -- | -0.187 | 12.1 | 17.77 | 35734 | -- | -- |
| 21.88 | 0.219 | 10.8 | 0.728 | -- | -- | -- | -- | -0.00124 | -- | -- | -- | -- | -- |
| 35.8 | 0.28 | 10.8 | -- | 0.0343 | -- | -- | -- | -0.0826 | 7.06 | -- | -- | -- | -- |
| 22.39 | 0.22 | 10.8 | -- | -- | -0.781 | -- | -- | -0.186 | -- | 17.83 | 35721 | -- | -- |
| 35.87 | 0.28 | 10.8 | -- | -- | -- | -- | -- | -0.082 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.06 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 4 | 18.14 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 7 | 18.15 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 28 | 18.23 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 30 | 18.25 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 33 | 18.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 38 | 18.28 | temperature | 25.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 48 | 18.30 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 11 |
| 53 | 18.32 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 71 | 18.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 88 | 18.38 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 89 | 18.38 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 113 | 18.41 | temperature | 20.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 135 | 18.43 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 6 | NA |
| 136 | 18.43 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 137 | 18.43 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 138 | 18.43 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 23 | 7 |
| 146 | 18.44 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 177 | 18.46 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 178 | 18.46 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 179 | 18.46 | temperature | 10.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 287 | 18.50 | temperature | 30.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 318 | 18.51 | temperature | 10.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 352 | 18.52 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 441 | 18.54 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 545 | 18.57 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 586 | 18.59 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 621 | 18.60 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 624 | 18.60 | wind | 1.0 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 673 | 18.60 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 676 | 18.61 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 677 | 18.61 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 15 |
| 716 | 18.62 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 13 |
| 744 | 18.63 | wind | 1.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 750 | 18.63 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 754 | 18.63 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 793 | 18.64 | wind | 1.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 861 | 18.65 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 900 | 18.66 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 903 | 18.66 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 946 | 18.66 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 959 | 18.67 | wind | 1.0 | 43200 | < th | dose independent | rect. | 15 | 11 |
| 968 | 18.67 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 969 | 18.67 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 970 | 18.67 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 973 | 18.67 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 984 | 18.67 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 10 |