BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0706000 Os01g0706000|AK059936
         (184 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0706000  Similar to RNA polymerase II transcriptional c...   265   1e-71
Os02g0553600  Similar to RNA polymerase II transcriptional c...    69   2e-12

>Os01g0706000 Similar to RNA polymerase II transcriptional coactivator KELP
          Length = 184

 Score =  265 bits (678), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/184 (77%), Positives = 143/184 (77%)

Query: 1   MDEETQKKVESTVLEILRGSDMESLTEFKVRTAAADRLGIDLSIPDRKRFVRRVVEGYLE 60
           MDEETQKKVESTVLEILRGSDMESLTEFKVRTAAADRLGIDLSIPDRKRFVRRVVEGYLE
Sbjct: 1   MDEETQKKVESTVLEILRGSDMESLTEFKVRTAAADRLGIDLSIPDRKRFVRRVVEGYLE 60

Query: 61  SLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKREYDDEGDLILCRL 120
           SLS                                         TKREYDDEGDLILCRL
Sbjct: 61  SLSQEDEQEQQQEQAGGAGEEGKDEQAEEEEEEEEEEEEERGGGTKREYDDEGDLILCRL 120

Query: 121 SARRRVTLQEFKGKTLLSIREYYFKDGKELPAKGISLTVEQWEAFRDSVPAIEDAIKKLG 180
           SARRRVTLQEFKGKTLLSIREYYFKDGKELPAKGISLTVEQWEAFRDSVPAIEDAIKKLG
Sbjct: 121 SARRRVTLQEFKGKTLLSIREYYFKDGKELPAKGISLTVEQWEAFRDSVPAIEDAIKKLG 180

Query: 181 ESSD 184
           ESSD
Sbjct: 181 ESSD 184



>Os02g0553600 Similar to RNA polymerase II transcriptional coactivator KIWI
          Length = 101

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 114 DLILCRLSARRRVTLQEFKGKTLLSIREYYFKDGKELPA-KGISLTVEQWEAFRDSVPAI 172
           D+++ ++S  RRV ++ + GK ++ IRE+Y KDGK LP  KGI L ++QW+  RD++ AI
Sbjct: 34  DIVVAQISKNRRVAVRTWNGKVVVDIREFYEKDGKTLPGRKGIQLPMDQWKILRDNIKAI 93

Query: 173 EDAIK 177
           ++AIK
Sbjct: 94  DEAIK 98



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,374,772
Number of extensions: 135140
Number of successful extensions: 278
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 3
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)