BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0706000 Os01g0706000|AK059936
(184 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10920.1 | chr4:6697894-6699103 REVERSE LENGTH=166 142 7e-35
AT5G09250.1 | chr5:2875421-2876368 REVERSE LENGTH=108 74 6e-14
AT4G00980.1 | chr4:422732-424580 REVERSE LENGTH=489 70 6e-13
>AT4G10920.1 | chr4:6697894-6699103 REVERSE LENGTH=166
Length = 165
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 102/168 (60%), Gaps = 20/168 (11%)
Query: 13 VLEILRGSDMESLTEFKVRTAAADRLGIDLSIPDRKRFVRRVVEGYLESLSXXXXXXXXX 72
V+EIL SDM+ +TEFKVR A+++L IDLS K FVR VVE +L+
Sbjct: 13 VIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLDE----------- 61
Query: 73 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKREYDDEGDLILCRLSARRRVTLQEFK 132
+E+DD+GDLI+CRLS +RRVT+QEFK
Sbjct: 62 --------ERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFK 113
Query: 133 GKTLLSIREYYFKDGKELP-AKGISLTVEQWEAFRDSVPAIEDAIKKL 179
GK+L+SIREYY KDGKELP +KGISLT EQW F+ ++PAIE+A+KK+
Sbjct: 114 GKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKM 161
>AT5G09250.1 | chr5:2875421-2876368 REVERSE LENGTH=108
Length = 107
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 108 EYDDEGDLILCRLSARRRVTLQEFKGKTLLSIREYYFKDGKELPA-KGISLTVEQWEAFR 166
+ D D+++C +S RRV+++ + GK + IRE+Y KDGK LP KGISL+V+QW R
Sbjct: 34 DSDQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLR 93
Query: 167 DSVPAIEDAIKKL 179
+ IE A+ L
Sbjct: 94 NHAEDIEKALSDL 106
>AT4G00980.1 | chr4:422732-424580 REVERSE LENGTH=489
Length = 488
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 7 KKVESTVLEILRGSDMESLTEFKVRTAAADRLGIDLSIPDRKRFVRRVVEGYLESLSXXX 66
+K+E TV IL SDM+ +TEFK+R A+ +LGIDLS + K+ VR V+E +L S
Sbjct: 18 QKIEETVKSILSESDMDQMTEFKLRLDASAKLGIDLSGTNHKKLVRDVLEVFLLSTPGEA 77
Query: 67 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKREYDDEGDLILCRLSARRRV 126
E + +C+LS ++
Sbjct: 78 LVPETVAPAKNETVSVAAASV----------------------GGEDERFICKLSEKQNA 115
Query: 127 TLQEFKGKTLLSIREYYFKDGKELPAKGISLTVEQWEAFRDSVPAIEDAIKKL 179
T+Q ++G+ LSI + GK +G L+ QW + + AIED IK+
Sbjct: 116 TVQRYRGQPFLSIGSQ--EHGKAF--RGAHLSTNQWSVIKKNFAAIEDGIKQC 164
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,859,936
Number of extensions: 91937
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 4
Length of query: 184
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 92
Effective length of database: 8,584,297
Effective search space: 789755324
Effective search space used: 789755324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)