BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0535700 Os02g0535700|AK073473
         (160 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0535700  Protein of unknown function DUF1022 family pro...   333   4e-92
Os04g0414000  Protein of unknown function DUF1022 family pro...   252   9e-68

>Os02g0535700 Protein of unknown function DUF1022 family protein
          Length = 160

 Score =  333 bits (853), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   LGNCKYGVDLARQLIASTYNVLDSCGSVRVSFSRRTPRKVSDIISKEFAGHPKIYIWDGE 60
           LGNCKYGVDLARQLIASTYNVLDSCGSVRVSFSRRTPRKVSDIISKEFAGHPKIYIWDGE
Sbjct: 1   LGNCKYGVDLARQLIASTYNVLDSCGSVRVSFSRRTPRKVSDIISKEFAGHPKIYIWDGE 60

Query: 61  EPNPHMGHLAWADAFVVTADSISMLSEACSTGKPVYVIGTEYCKWKFSAFHKTLRERGVV 120
           EPNPHMGHLAWADAFVVTADSISMLSEACSTGKPVYVIGTEYCKWKFSAFHKTLRERGVV
Sbjct: 61  EPNPHMGHLAWADAFVVTADSISMLSEACSTGKPVYVIGTEYCKWKFSAFHKTLRERGVV 120

Query: 121 RPFTGLEDISNSWSYPPLNDAIEVATRVREAIAERGWSVG 160
           RPFTGLEDISNSWSYPPLNDAIEVATRVREAIAERGWSVG
Sbjct: 121 RPFTGLEDISNSWSYPPLNDAIEVATRVREAIAERGWSVG 160



>Os04g0414000 Protein of unknown function DUF1022 family protein
          Length = 554

 Score =  252 bits (643), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 112/145 (77%), Positives = 130/145 (89%)

Query: 3   NCKYGVDLARQLIASTYNVLDSCGSVRVSFSRRTPRKVSDIISKEFAGHPKIYIWDGEEP 62
           NC Y V LA++LI+S +NVL +CGSVRVSFSRRTP KVSD+I KEF+ HPK+YIW+GE P
Sbjct: 231 NCNYDVGLAKKLISSLHNVLKTCGSVRVSFSRRTPHKVSDLILKEFSTHPKVYIWNGEGP 290

Query: 63  NPHMGHLAWADAFVVTADSISMLSEACSTGKPVYVIGTEYCKWKFSAFHKTLRERGVVRP 122
           NPH+GHLAWADAFV+TADSISMLSEACSTGKPVYV+GTE+C+WKFS FH  L ERG VRP
Sbjct: 291 NPHLGHLAWADAFVITADSISMLSEACSTGKPVYVVGTEHCRWKFSDFHNRLHERGAVRP 350

Query: 123 FTGLEDISNSWSYPPLNDAIEVATR 147
           FTGLED+S++WSYPPLNDAI+VA R
Sbjct: 351 FTGLEDMSDNWSYPPLNDAIDVAAR 375



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,791,450
Number of extensions: 220056
Number of successful extensions: 485
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)