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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0414000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1022 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0369) R2 : 0.000104
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0169 (0.0777) R2dN8 : 0.000134 R2N8 : 0.000104
σ : 0.695
deviance : 221.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
213.29 0.686 2.91 0.13 0.021 0.809 -0.639 1.67 0.0261 7.89 1015 4156 -- --
214.4 0.682 2.89 0.288 0.0126 0.43 -0.761 -- 0.0734 7.65 1011 4056 -- --
213.68 0.681 2.92 0.136 0.0439 1.78 -- 3.8 0.0252 12.9 1016 4074 -- --
215.94 0.684 2.89 0.26 0.0363 0.434 -- -- 0.0665 13.7 1011 3966 -- --
213.82 0.681 2.92 0.118 -- 1.8 -- 3.86 0.0246 -- 1016 4074 -- --
219.1 0.694 2.9 0.2 0.00169 -- -0.743 -- 0.00222 7.71 -- -- -- --
220.52 0.695 2.9 0.184 0.0515 -- -- -- 0.00441 13.9 -- -- -- --
216.02 0.685 2.89 0.27 -- 0.444 -- -- 0.0738 -- 1011 3966 -- --
217.72 0.687 2.89 -- 0.0338 0.425 -- -- 0.0364 13.8 1012 3638 -- --
220.68 0.694 2.9 0.182 -- -- -- -- 0.00322 -- -- -- -- --
221.41 0.696 2.91 -- 0.0481 -- -- -- -0.016 13.8 -- -- -- --
217.79 0.687 2.9 -- -- 0.433 -- -- 0.0326 -- 1012 3629 -- --
221.55 0.695 2.91 -- -- -- -- -- -0.0169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.34 precipitation 0.1 10 > th dose independent rect. 19 1
11 203.34 precipitation 0.1 10 > th dose dependent rect. 19 1
69 206.38 atmosphere 1015.0 1440 < th dose independent rect. 7 4
70 206.38 atmosphere 1015.0 1440 < th dose independent rect. 4 7
81 206.75 atmosphere 1015.0 1440 > th dose independent rect. 10 1
96 206.75 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
122 207.46 wind 1.0 10 < th dose dependent rect. 1 1
135 207.53 wind 1.0 30 < th dose independent rect. 17 1
146 207.53 wind 1.0 30 < th dose dependent rect. 17 1
162 207.82 wind 7.0 30 > th dose dependent rect. 19 1
204 208.38 humidity 70.0 30 < th dose independent rect. 17 1
205 208.62 humidity 70.0 90 < th dose dependent rect. 17 2
279 209.88 wind 1.0 10 < th dose independent rect. 1 1
281 210.09 precipitation 0.1 1440 > th dose independent rect. 18 2
284 210.26 humidity 50.0 4320 > th dose independent rect. 11 4
285 210.29 humidity 50.0 4320 > th dose independent rect. 14 1
288 210.37 humidity 50.0 4320 > th dose independent rect. 22 17
289 210.38 humidity 50.0 4320 > th dose independent rect. 24 15
292 210.40 humidity 50.0 4320 > th dose independent rect. 19 20
293 210.41 humidity 50.0 4320 > th dose independent rect. 4 11
295 210.42 atmosphere 995.0 4320 > th dose independent rect. 2 1
296 210.42 humidity 50.0 4320 > th dose independent rect. 7 8
326 210.78 precipitation 0.1 1440 > th dose dependent rect. 19 1
354 211.17 radiation 40.0 1440 < th dose independent rect. 16 10
373 211.44 wind 7.0 30 > th dose independent rect. 19 1
377 211.52 temperature 20.0 30 > th dose dependent rect. 2 1
380 211.64 atmosphere 1005.0 90 < th dose dependent rect. 11 4
384 211.77 precipitation 0.1 1440 < th dose independent rect. 19 1
385 211.77 precipitation 0.1 1440 < th dose dependent rect. 19 1
386 211.80 temperature 20.0 90 > th dose independent rect. 24 1
403 212.02 temperature 30.0 10 < th dose independent rect. 2 23
404 212.04 humidity 50.0 4320 > th dose independent sin 7 NA
407 212.10 temperature 20.0 30 > th dose independent rect. 2 1
410 212.15 radiation 10.0 14400 < th dose dependent rect. 1 2
411 212.16 humidity 80.0 10 > th dose independent rect. 1 1
412 212.18 humidity 70.0 10 > th dose dependent rect. 1 1
419 212.28 precipitation 0.1 10 < th dose independent rect. 2 23
420 212.28 precipitation 0.1 10 < th dose dependent rect. 2 23
427 212.38 atmosphere 1005.0 30 > th dose independent rect. 2 1
429 212.39 atmosphere 1015.0 4320 > th dose dependent rect. 3 1
431 212.40 atmosphere 1015.0 4320 > th dose independent rect. 2 1
438 212.43 atmosphere 1015.0 4320 < th dose independent rect. 3 1
440 212.44 precipitation 0.1 10 < th dose independent sin 21 NA
442 212.44 precipitation 0.1 10 < th dose dependent sin 21 NA
449 212.49 wind 5.0 10 < th dose independent rect. 13 12
452 212.51 precipitation 0.1 10 > th dose independent sin 21 NA
453 212.51 temperature 25.0 30 < th dose dependent rect. 1 1
469 212.52 precipitation 0.1 10 > th dose dependent sin 21 NA
471 212.52 atmosphere 1005.0 30 > th dose dependent rect. 2 1
509 212.64 humidity 60.0 4320 < th dose dependent rect. 11 1
512 212.65 wind 7.0 10 < th dose dependent rect. 1 1
578 212.83 precipitation 0.1 10 < th dose independent rect. 1 1
580 212.83 radiation 30.0 10 < th dose independent rect. 13 12
581 212.83 precipitation 0.1 10 < th dose dependent rect. 1 1
584 212.83 wind 9.0 10 < th dose dependent rect. 13 12
616 212.95 humidity 60.0 4320 < th dose independent rect. 11 1
625 212.96 humidity 60.0 14400 < th dose dependent rect. 18 15
628 212.97 wind 3.0 10 < th dose independent rect. 19 6
654 213.03 temperature 30.0 270 < th dose independent rect. 2 13
656 213.04 wind 9.0 1440 < th dose independent rect. 2 1
659 213.04 temperature 10.0 1440 > th dose independent rect. 2 1
662 213.04 temperature 30.0 1440 < th dose independent rect. 2 1
666 213.04 humidity 50.0 1440 > th dose independent rect. 2 1
677 213.04 radiation 1.0 1440 < th dose independent rect. 2 1
697 213.04 temperature 30.0 270 > th dose independent rect. 10 6
701 213.04 wind 9.0 30 < th dose independent rect. 2 23
702 213.04 temperature 10.0 1440 > th dose independent rect. 3 23
728 213.05 wind 7.0 10 < th dose independent rect. 1 1
732 213.05 temperature 10.0 10 > th dose independent rect. 1 1
736 213.05 temperature 30.0 10 < th dose independent rect. 1 1
738 213.05 humidity 50.0 10 > th dose independent rect. 1 1
744 213.05 atmosphere 995.0 10 > th dose independent rect. 1 1
746 213.05 atmosphere 1010.0 10 < th dose independent rect. 1 1
750 213.05 radiation 1.0 10 < th dose independent rect. 1 1
762 213.05 humidity 50.0 4320 < th dose independent rect. 11 4
766 213.05 temperature 10.0 10 > th dose independent rect. 2 23
770 213.05 radiation 1.0 10 < th dose dependent rect. 1 1
781 213.06 temperature 30.0 270 < th dose independent sin 3 NA
803 213.08 wind 1.0 90 > th dose independent rect. 24 1
818 213.11 temperature 30.0 270 > th dose independent rect. 18 22
944 213.19 precipitation 0.1 10 < th dose independent rect. 12 13
947 213.19 precipitation 0.1 10 < th dose dependent rect. 12 13
969 213.22 atmosphere 1015.0 90 < th dose dependent rect. 24 1
973 213.23 humidity 50.0 4320 < th dose independent rect. 14 1
977 213.23 humidity 50.0 270 > th dose independent rect. 2 13