BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0527200 Os02g0527200|AK058851
(200 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0527200 Conserved hypothetical protein 343 4e-95
Os06g0136300 Conserved hypothetical protein 100 7e-22
Os02g0448600 Hypothetical protein 73 1e-13
>Os02g0527200 Conserved hypothetical protein
Length = 200
Score = 343 bits (881), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 176/200 (88%), Positives = 176/200 (88%)
Query: 1 MEHKDRQRHAAAAVAKPRQRSASFHGRGEAEQRHSLLKQRPRTQPDLLAGLRGQSFXXXX 60
MEHKDRQRHAAAAVAKPRQRSASFHGRGEAEQRHSLLKQRPRTQPDLLAGLRGQSF
Sbjct: 1 MEHKDRQRHAAAAVAKPRQRSASFHGRGEAEQRHSLLKQRPRTQPDLLAGLRGQSFRRGG 60
Query: 61 XXXXXXXXXXXVLLTVAVRQSMWPLHVMARAEWSVADLVAAAVELYIREGRRPLLPSADP 120
VLLTVAVRQSMWPLHVMARAEWSVADLVAAAVELYIREGRRPLLPSADP
Sbjct: 61 GEGRAPAGPSRVLLTVAVRQSMWPLHVMARAEWSVADLVAAAVELYIREGRRPLLPSADP 120
Query: 121 AAFGLHFSQFSLQSLNPEEKLMELGSRSFFLCPKXXXXXXXXXSSGEDTGGLSGEDEANS 180
AAFGLHFSQFSLQSLNPEEKLMELGSRSFFLCPK SSGEDTGGLSGEDEANS
Sbjct: 121 AAFGLHFSQFSLQSLNPEEKLMELGSRSFFLCPKAAAAAVAAVSSGEDTGGLSGEDEANS 180
Query: 181 AKKPSVLAPWLGFLHFWPLL 200
AKKPSVLAPWLGFLHFWPLL
Sbjct: 181 AKKPSVLAPWLGFLHFWPLL 200
>Os06g0136300 Conserved hypothetical protein
Length = 123
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Query: 75 TVAVRQSMWPLHVMARAEWSVADLVAAAVELYIREGRRPLLPS-----ADPAAFGLHFSQ 129
V V QS+WP+HV+ A+ +VADLV AAV+ Y+REGRRP LPS A F LHFS+
Sbjct: 34 NVTVEQSLWPVHVVIGADCTVADLVRAAVDAYVREGRRPPLPSAGGGGDAAAGFELHFSK 93
Query: 130 FSLQSLNPEEKLMELGSRSFFLCPK 154
+SL+SL PEEKL++LGSR+FFLC +
Sbjct: 94 YSLESLRPEEKLVDLGSRNFFLCAR 118
>Os02g0448600 Hypothetical protein
Length = 256
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 72 VLLTVAVRQSMWPLHVMARAEWSVADLVAAAVELYIREGRRPLLPSADPAAFGLHFSQFS 131
V+++V V S+ P+ M R SV + +AA VE Y +EGR P L A AF LH S F
Sbjct: 108 VVVSVTVEGSVGPVKAMVRLGASVGEAIAAVVERYAKEGRSPRLDPAAAEAFQLHHSHFC 167
Query: 132 LQSLNPEEKLMELGSRSFFL 151
LQSLN +K+ ++G R+F+L
Sbjct: 168 LQSLNKNDKIGDVGGRNFYL 187
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,517,743
Number of extensions: 234904
Number of successful extensions: 664
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)