BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0522700 Os02g0522700|J013132F12
         (111 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0522700  Hypothetical protein                                174   2e-44
Os02g0513800  Ovarian tumour, otubain domain containing protein    65   9e-12

>Os02g0522700 Hypothetical protein
          Length = 111

 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/95 (89%), Positives = 85/95 (89%)

Query: 1  MQWCSTQVIPPRVYADEXXXXXXXXXXQVFIRVEAPEYGGRQDSYYIARDRPRVTLLRMD 60
          MQWCSTQVIPPRVYADE          QVFIRVEAPEYGGRQDSYYIARDRPRVTLLRMD
Sbjct: 1  MQWCSTQVIPPRVYADEVAVRALAAALQVFIRVEAPEYGGRQDSYYIARDRPRVTLLRMD 60

Query: 61 SQYDIVYPLSPELIHQRAKRGGASRFYCCIGGDSN 95
          SQYDIVYPLSPELIHQRAKRGGASRFYCCIGGDSN
Sbjct: 61 SQYDIVYPLSPELIHQRAKRGGASRFYCCIGGDSN 95



>Os02g0513800 Ovarian tumour, otubain domain containing protein
          Length = 605

 Score = 65.5 bits (158), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 42/73 (57%)

Query: 3   WCSTQVIPPRVYADEXXXXXXXXXXQVFIRVEAPEYGGRQDSYYIARDRPRVTLLRMDSQ 62
           WCS  VI PRVYA            +V ++VE    G  + ++YI R  P VTLLR++S 
Sbjct: 169 WCSKHVIAPRVYATSAAVKACAEALRVTVQVENVHDGTCESTHYIVRGAPCVTLLRIESH 228

Query: 63  YDIVYPLSPELIH 75
           YDI+YPL P  I+
Sbjct: 229 YDIIYPLPPSSIN 241



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,397,969
Number of extensions: 115323
Number of successful extensions: 149
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)