BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0520800 Os02g0520800|AK102815
         (272 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0520800  Similar to Ubiquinol-cytochrome c reductase ir...   467   e-132
Os04g0398500  Similar to Ubiquinol-cytochrome c reductase ir...   413   e-116

>Os02g0520800 Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit,
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein) (RISP)
          Length = 272

 Score =  467 bits (1201), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/272 (85%), Positives = 233/272 (85%)

Query: 1   MLRVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDEFSREPQRPRFAVDSPFFAASRGF 60
           MLRVAG                            DDEFSREPQRPRFAVDSPFFAASRGF
Sbjct: 1   MLRVAGRRLTTALAWRPAAAAGARGPLAGGSLPGDDEFSREPQRPRFAVDSPFFAASRGF 60

Query: 61  SSETLVPRNQDVSLTELPATVSAVKNPSAKIVYDEYNHERYQPGDPSKRAFAYFVLSGGR 120
           SSETLVPRNQDVSLTELPATVSAVKNPSAKIVYDEYNHERYQPGDPSKRAFAYFVLSGGR
Sbjct: 61  SSETLVPRNQDVSLTELPATVSAVKNPSAKIVYDEYNHERYQPGDPSKRAFAYFVLSGGR 120

Query: 121 FIYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEE 180
           FIYAS           SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEE
Sbjct: 121 FIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEE 180

Query: 181 DINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSH 240
           DINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSH
Sbjct: 181 DINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSH 240

Query: 241 YDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272
           YDISGRIRKGPAPYNLEVPTYSFLEENKLLIG
Sbjct: 241 YDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272



>Os04g0398500 Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit,
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein) (RISP)
          Length = 278

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/230 (86%), Positives = 211/230 (91%), Gaps = 1/230 (0%)

Query: 44  RPRFAVDSPFFAASRGFSS-ETLVPRNQDVSLTELPATVSAVKNPSAKIVYDEYNHERYQ 102
           +PRF+++SPFFAA+RGFSS ETLVPRNQD  L ELPATV+A+KNP+ K+VYDEYNHER+ 
Sbjct: 49  QPRFSIESPFFAAARGFSSSETLVPRNQDTGLAELPATVAALKNPNPKVVYDEYNHERHA 108

Query: 103 PGDPSKRAFAYFVLSGGRFIYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTT 162
           PGDPSKRAFAYFVLSGGRFIYAS           SMSASKDVLALASLEVDLSSIEPGTT
Sbjct: 109 PGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTT 168

Query: 163 VTVKWRGKPVFIRRRTEEDINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIP 222
           VTVKWRGKPVFIRRRTE+DI LANSVD+GSLR PQQDAERVKNPEWLVVIGVCTHLGCIP
Sbjct: 169 VTVKWRGKPVFIRRRTEDDIALANSVDVGSLRHPQQDAERVKNPEWLVVIGVCTHLGCIP 228

Query: 223 LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272
           LPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVPTYSFLEENKLLIG
Sbjct: 229 LPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPTYSFLEENKLLIG 278



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,314,122
Number of extensions: 335956
Number of successful extensions: 728
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)