Os02g0520800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP).
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Os02g0520800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7.45 | 0.128 | 13.4 | 0.218 | 0.0576 | -0.263 | -0.262 | -0.653 | 0.133 | 22.9 | 29.6 | 2069 | -- | -- |
| 7.49 | 0.127 | 13.4 | 0.101 | 0.0572 | -0.331 | -0.248 | -- | 0.121 | 22.7 | 29.8 | 2075 | -- | -- |
| 7.73 | 0.13 | 13.4 | 0.224 | 0.0635 | -0.26 | -- | -0.611 | 0.128 | 23 | 29.6 | 2027 | -- | -- |
| 7.76 | 0.13 | 13.4 | 0.113 | 0.0584 | -0.335 | -- | -- | 0.126 | 22.9 | 29.78 | 2062 | -- | -- |
| 7.94 | 0.131 | 13.4 | 0.216 | -- | -0.276 | -- | -0.54 | 0.128 | -- | 29.5 | 2075 | -- | -- |
| 10.69 | 0.153 | 13.4 | 0.185 | 0.098 | -- | -0.205 | -- | 0.107 | 22 | -- | -- | -- | -- |
| 10.85 | 0.154 | 13.4 | 0.193 | 0.1 | -- | -- | -- | 0.108 | 21.7 | -- | -- | -- | -- |
| 7.96 | 0.131 | 13.4 | 0.109 | -- | -0.338 | -- | -- | 0.118 | -- | 29.6 | 2100 | -- | -- |
| 8.08 | 0.132 | 13.4 | -- | 0.057 | -0.358 | -- | -- | 0.115 | 23.1 | 29.76 | 2068 | -- | -- |
| 11.44 | 0.158 | 13.4 | 0.194 | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
| 11.83 | 0.161 | 13.4 | -- | 0.101 | -- | -- | -- | 0.0864 | 21.8 | -- | -- | -- | -- |
| 8.26 | 0.134 | 13.4 | -- | -- | -0.363 | -- | -- | 0.105 | -- | 29.64 | 2100 | -- | -- |
| 12.44 | 0.165 | 13.4 | -- | -- | -- | -- | -- | 0.0862 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.47 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 7 | 7.52 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 11 | 7.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 12 |
| 22 | 7.59 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 23 | 7.59 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 24 | 7.59 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 32 | 7.60 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 66 | 7.61 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 69 | 7.61 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 84 | 7.62 | temperature | 30.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 89 | 7.62 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 90 | 7.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 131 | 7.65 | temperature | 30.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 175 | 7.67 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 222 | 7.69 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 224 | 7.69 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 233 | 7.69 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 334 | 7.72 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 345 | 7.73 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 346 | 7.73 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 347 | 7.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 384 | 7.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 423 | 7.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 464 | 7.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 472 | 7.75 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 587 | 7.75 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 606 | 7.76 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 694 | 7.79 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 772 | 7.81 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 799 | 7.82 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 810 | 7.82 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 875 | 7.84 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 884 | 7.84 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 21 | 8 |