BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0520800 Os02g0520800|AK102815
         (272 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13430.1  | chr5:4305414-4307399 REVERSE LENGTH=273            369   e-102
AT5G13440.1  | chr5:4308431-4310022 REVERSE LENGTH=275            367   e-102
AT4G03280.1  | chr4:1440314-1441717 FORWARD LENGTH=230             57   1e-08

>AT5G13430.1 | chr5:4305414-4307399 REVERSE LENGTH=273
          Length = 272

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/215 (81%), Positives = 190/215 (88%)

Query: 58  RGFSSETLVPRNQDVSLTELPATVSAVKNPSAKIVYDEYNHERYQPGDPSKRAFAYFVLS 117
           RGFSS+ L   N+    +E+PATV AVK P++KIVYD++NHERY PGDPSKRAFAYFVLS
Sbjct: 58  RGFSSQVLAQGNEIGFGSEVPATVEAVKTPNSKIVYDDHNHERYPPGDPSKRAFAYFVLS 117

Query: 118 GGRFIYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRR 177
           GGRF+YAS           SMSASKDVLALASLEVDL SIEPGTTVTVKWRGKPVFIRRR
Sbjct: 118 GGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRR 177

Query: 178 TEEDINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCH 237
           TE+DI LANSVD+GSLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIPLPNAGD+GGWFCPCH
Sbjct: 178 TEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDYGGWFCPCH 237

Query: 238 GSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272
           GSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG
Sbjct: 238 GSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272



>AT5G13440.1 | chr5:4308431-4310022 REVERSE LENGTH=275
          Length = 274

 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/215 (80%), Positives = 190/215 (88%)

Query: 58  RGFSSETLVPRNQDVSLTELPATVSAVKNPSAKIVYDEYNHERYQPGDPSKRAFAYFVLS 117
           RGF+S+ +   N+    +E+PATV AVK P++KIVYD++NHERY PGDPSKRAFAYFVLS
Sbjct: 60  RGFASQVITQGNEIGFGSEVPATVEAVKTPNSKIVYDDHNHERYPPGDPSKRAFAYFVLS 119

Query: 118 GGRFIYASXXXXXXXXXXXSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRR 177
           GGRF+YAS           SMSASKDVLALASLEVDL SIEPGTTVTVKWRGKPVFIRRR
Sbjct: 120 GGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRR 179

Query: 178 TEEDINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCH 237
           TE+DI LANSVD+GSLRDPQ+D+ RVKNPEWL+V+GVCTHLGCIPLPNAGD+GGWFCPCH
Sbjct: 180 TEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDYGGWFCPCH 239

Query: 238 GSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272
           GSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG
Sbjct: 240 GSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 274



>AT4G03280.1 | chr4:1440314-1441717 FORWARD LENGTH=230
          Length = 229

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 203 VKNPEWLVVIG---VCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP 259
           V+N + L   G   VCTHLGC+   N  +   + CPCHGS Y+  GR+ +GPAP +L + 
Sbjct: 142 VENDKTLATYGINAVCTHLGCVVPWNKAE-NKFLCPCHGSQYNAQGRVVRGPAPLSLALA 200

Query: 260 TYSFLEENKLL 270
                E  K+L
Sbjct: 201 HADIDEAGKVL 211



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,228,205
Number of extensions: 210664
Number of successful extensions: 444
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 3
Length of query: 272
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,447,217
Effective search space: 1478262975
Effective search space used: 1478262975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)