Os04g0398500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP).
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Os04g0398500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.5 | 0.145 | 12.9 | 0.659 | 0.244 | 0.362 | 0.262 | 0.0352 | 0.255 | 2.5 | 21.93 | 820 | -- | -- |
| 9.5 | 0.144 | 12.9 | 0.657 | 0.243 | 0.35 | 0.264 | -- | 0.256 | 2.47 | 22.1 | 800 | -- | -- |
| 9.73 | 0.145 | 12.9 | 0.667 | 0.242 | 0.347 | -- | -0.063 | 0.259 | 2.58 | 22.1 | 825 | -- | -- |
| 9.73 | 0.145 | 12.9 | 0.656 | 0.245 | 0.36 | -- | -- | 0.254 | 2.66 | 21.91 | 826 | -- | -- |
| 11.13 | 0.155 | 12.9 | 0.647 | -- | 0.449 | -- | 0.0725 | 0.272 | -- | 44.86 | 12 | -- | -- |
| 10.84 | 0.154 | 12.9 | 0.571 | 0.225 | -- | 0.283 | -- | 0.21 | 2.89 | -- | -- | -- | -- |
| 11.1 | 0.156 | 12.9 | 0.564 | 0.228 | -- | -- | -- | 0.208 | 3.13 | -- | -- | -- | -- |
| 11.14 | 0.155 | 12.9 | 0.657 | -- | 0.451 | -- | -- | 0.274 | -- | 57.04 | 12 | -- | -- |
| 14.8 | 0.179 | 12.9 | -- | 0.228 | -0.39 | -- | -- | 0.0438 | 3.22 | 24.6 | 17578 | -- | -- |
| 14.05 | 0.175 | 12.9 | 0.574 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 19.48 | 0.206 | 12.9 | -- | 0.239 | -- | -- | -- | 0.145 | 3.13 | -- | -- | -- | -- |
| 16.45 | 0.189 | 12.9 | -- | -- | -0.404 | -- | -- | 0.0318 | -- | 27.6 | 47520 | -- | -- |
| 22.73 | 0.223 | 12.9 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.20 | temperature | 20 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 9.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 6 | 9.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 22 | 9.25 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 7 |
| 31 | 9.26 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 40 | 9.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 57 | 9.29 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 10 |
| 58 | 9.29 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 10 |
| 59 | 9.29 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 114 | 9.32 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 16 |
| 116 | 9.32 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 130 | 9.33 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 139 | 9.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 168 | 9.35 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 175 | 9.35 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 290 | 9.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 400 | 9.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 13 |
| 424 | 9.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 434 | 9.45 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 518 | 9.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 656 | 9.52 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 785 | 9.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 905 | 9.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 942 | 9.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 945 | 9.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 998 | 9.62 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |