BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0510600 Os02g0510600|AK073949
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0510600 Heavy metal transport/detoxification protein d... 324 5e-89
Os10g0209700 Heavy metal transport/detoxification protein d... 124 1e-28
Os07g0298900 Heavy metal transport/detoxification protein d... 121 9e-28
Os03g0861400 Heavy metal transport/detoxification protein d... 94 1e-19
>Os02g0510600 Heavy metal transport/detoxification protein domain containing
protein
Length = 323
Score = 324 bits (831), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 178/275 (64%), Positives = 178/275 (64%)
Query: 49 VMRVFMHCEGCARKVKKILRGFDGVEDVVADSKAHKVIVKGKKAAADPMKVVHRVQKKTG 108
VMRVFMHCEGCARKVKKILRGFDGVEDVVADSKAHKVIVKGKKAAADPMKVVHRVQKKTG
Sbjct: 49 VMRVFMHCEGCARKVKKILRGFDGVEDVVADSKAHKVIVKGKKAAADPMKVVHRVQKKTG 108
Query: 109 RKVELLSPMXXXXXXXXXXXXXXXXXXXXXXXXXXTVIAVVLKVHMHCEACAQVIRKKIL 168
RKVELLSPM TVIAVVLKVHMHCEACAQVIRKKIL
Sbjct: 109 RKVELLSPMPPPVEEKKEEEKKEEPEPPKPEEKEPTVIAVVLKVHMHCEACAQVIRKKIL 168
Query: 169 KMKGVQSAEPDMKASQVTVKGVFEESKLTDYVHKRIGKNAAVVKSEPAPPPXXXXXXXXX 228
KMKGVQSAEPDMKASQVTVKGVFEESKLTDYVHKRIGKNAAVVKSEPAPPP
Sbjct: 169 KMKGVQSAEPDMKASQVTVKGVFEESKLTDYVHKRIGKNAAVVKSEPAPPPENAGDANAK 228
Query: 229 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXPSALAAANLYMH 288
V PSALAAANLYMH
Sbjct: 229 DDKKAAEGGEEKDESKEEKKEGDDEKEKEKEKDDSNAAEVEEKDKEKDPSALAAANLYMH 288
Query: 289 YPRFSNXXXXXXXXXXXXXXXQLFSDENPNACVVM 323
YPRFSN QLFSDENPNACVVM
Sbjct: 289 YPRFSNPGGYGVPGYAYPYAPQLFSDENPNACVVM 323
>Os10g0209700 Heavy metal transport/detoxification protein domain containing
protein
Length = 265
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 49 VMRVFMHCEGCARKVKKILRGFDGVEDVVADSKAHKVIVKGKKAAADPMKVVHRVQKKTG 108
V++V MHCEGCA+KV+K L F+GVE+V ADS++ V+VK + AADP KV RVQ+KT
Sbjct: 32 VLKVDMHCEGCAKKVEKSLLRFEGVENVKADSRSKTVVVKSR--AADPSKVCERVQRKTK 89
Query: 109 RKVELLSPMXXXXXXXXXXXXXXXXXXXXXXXXXXTVIAVVLKVHMHCEACAQVIRKKIL 168
R+VEL+ P+ T I V+LKV MHC+ACAQ+++K+I
Sbjct: 90 RRVELIFPLPPPPEEEKKEEAPAPPPEEKKEEPPKT-ITVILKVQMHCDACAQILQKRIS 148
Query: 169 KMKGVQSAEPDMKASQVTVKGVFEESKLTDYVHKRIGKNAAVVK 212
+ +GV+S E D+ V VKGV + + L + + ++ + A +V+
Sbjct: 149 RTEGVESVETDLLNGLVVVKGVMDPAVLIESIQRKTRRPAVIVE 192
>Os07g0298900 Heavy metal transport/detoxification protein domain containing
protein
Length = 418
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 100/177 (56%), Gaps = 10/177 (5%)
Query: 49 VMRVFMHCEGCARKVKKILRGFDGVEDVVADSKAHKVIVKGKKAAADPMKVVHRVQKKTG 108
V+ V +HC+GCARK+++ ++ DGVE+V D + + VIV+G KAA DP +V + ++TG
Sbjct: 49 VISVPVHCDGCARKLRRSVQRLDGVEEVTVDCRTNTVIVRGPKAAVDPAGIVEVLDRRTG 108
Query: 109 RKVELLSPMXXXXXXXXXXXXXXXXXXXXXXXXXXTV----------IAVVLKVHMHCEA 158
+K LLS + + + VV+++ +HCEA
Sbjct: 109 KKALLLSSLPSANLKPPLSPEKRSSETAKKDAAEQDMGKEMSEEDMEMVVVMRIDLHCEA 168
Query: 159 CAQVIRKKILKMKGVQSAEPDMKASQVTVKGVFEESKLTDYVHKRIGKNAAVVKSEP 215
C + I+++ILK+KGV+ P MK+SQV V+G E + L +HK G+ AA+ ++EP
Sbjct: 169 CCEEIKRRILKIKGVEEVTPHMKSSQVMVRGKVEPATLVGLIHKWTGRRAAIFRAEP 225
>Os03g0861400 Heavy metal transport/detoxification protein domain containing
protein
Length = 397
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 49 VMRVFMHCEGCARKVKKILRGFDGVEDVVADSKAHKVIVKGKKAAADPMKVVHRVQKKTG 108
++ V +HC GCAR++++ + GV+ V D +++ V G DP + R++ KT
Sbjct: 58 ILGVELHCTGCARRMRRCILRSKGVQGVEVDMGGNQLTVTG---IVDPQALCARLRHKTL 114
Query: 109 RKVELLSPMXXXXXXXXXXXXXXXXXXXXXXXXXXTVIAVVLKVHMHCEACAQVIRKKIL 168
R ++SP V V L V+MHCEACAQ + KKIL
Sbjct: 115 RNATVISPPPPPTSTEDQDQHQPSPRPPLVHSQVSDVTTVELLVNMHCEACAQQLHKKIL 174
Query: 169 KMKGVQSAEPDMKASQVTVKGVFEESKLTDYVHKRIGKNAA 209
KM+GVQ+A+ ++ ++TV G KL +Y+H+R GK A
Sbjct: 175 KMRGVQTADTNLSTGKLTVTGTVSGDKLAEYIHRRTGKLAT 215
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,387,878
Number of extensions: 137457
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)