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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0209700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0282) R2 : 0.63
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.93 (0.0693) R2dC : 0.633 R2C : 0.629
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0245 (0.0592) R2dN8 : 0.00018 R2N8 : -0.00362
σ : 0.53
deviance : 128.57
__
_____
C
peak time of C : 9.47
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.74 0.483 12.8 0.189 1.93 -0.685 1.1 1.51 -0.104 8.71 84.02 16 -- --
113.21 0.496 12.8 0.284 1.93 -0.65 0.78 -- -0.0819 8.6 83.89 19 -- --
109.41 0.487 12.8 0.237 1.94 -0.677 -- 1.27 -0.0978 8.72 84.2 22 -- --
114.94 0.499 12.8 0.299 1.92 -0.634 -- -- -0.0777 8.68 83.85 19 -- --
304.86 0.818 12.8 0.209 -- -0.835 -- 0.968 -0.00225 -- 65.15 4 -- --
125.88 0.526 12.8 0.206 1.93 -- 0.601 -- 0.0487 9.45 -- -- -- --
127.2 0.528 12.8 0.228 1.93 -- -- -- 0.0499 9.48 -- -- -- --
308.13 0.821 12.8 0.245 -- -0.806 -- -- 0.00433 -- 65.48 2 -- --
117.28 0.504 12.8 -- 1.92 -0.61 -- -- -0.102 8.69 83.42 19 -- --
345.85 0.869 12.8 0.216 -- -- -- -- 0.0556 -- -- -- -- --
128.57 0.53 12.8 -- 1.93 -- -- -- 0.0245 9.47 -- -- -- --
309.71 0.822 12.9 -- -- -0.8 -- -- -0.0232 -- 65.64 2 -- --
347.07 0.87 12.8 -- -- -- -- -- 0.0317 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.74 radiation 1.0 1440 < th dose dependent rect. 9 8
6 99.19 radiation 1.0 1440 < th dose independent rect. 11 1
7 99.19 radiation 1.0 1440 < th dose dependent rect. 11 1
9 99.35 radiation 1.0 1440 < th dose dependent rect. 15 1
10 99.37 radiation 1.0 1440 > th dose independent rect. 9 7
11 99.43 radiation 1.0 1440 < th dose independent rect. 9 7
12 99.46 radiation 1.0 1440 > th dose independent rect. 13 3
13 99.48 radiation 1.0 1440 > th dose independent rect. 11 5
41 100.84 wind 1.0 270 < th dose dependent rect. 24 1
47 101.23 radiation 1.0 90 < th dose dependent rect. 24 19
52 101.42 wind 1.0 270 < th dose independent rect. 23 3
65 101.94 radiation 1.0 90 < th dose independent rect. 24 19
67 102.15 temperature 20.0 90 > th dose independent rect. 24 5
73 102.30 humidity 80.0 10 > th dose dependent rect. 24 19
74 102.31 temperature 20.0 270 > th dose independent rect. 24 2
101 102.98 temperature 10.0 90 > th dose dependent rect. 5 10
119 103.40 temperature 20.0 10 > th dose independent rect. 1 4
135 103.62 temperature 10.0 90 > th dose dependent rect. 5 19
137 103.64 humidity 50.0 90 > th dose dependent rect. 15 14
144 103.76 humidity 80.0 90 > th dose dependent rect. 7 22
159 104.00 radiation 1.0 1440 < th dose independent rect. 11 10
162 104.01 temperature 10.0 10 > th dose dependent rect. 5 11
169 104.08 radiation 1.0 1440 < th dose independent rect. 11 17
170 104.10 humidity 60.0 14400 > th dose independent rect. 21 11
183 104.21 humidity 80.0 90 > th dose dependent rect. 24 5
198 104.29 temperature 10.0 270 > th dose dependent rect. 3 10
201 104.31 radiation 30.0 720 < th dose independent rect. 15 4
249 104.54 radiation 1.0 1440 < th dose dependent rect. 11 10
269 104.64 radiation 1.0 1440 < th dose dependent rect. 11 17
271 104.66 radiation 1.0 1440 < th dose independent sin 21 NA
287 104.72 humidity 70.0 270 > th dose dependent rect. 24 2
312 104.79 radiation 1.0 30 > th dose independent rect. 18 22
324 104.83 humidity 80.0 1440 > th dose independent rect. 11 3
332 104.87 precipitation 0.1 270 > th dose dependent rect. 2 2
336 104.89 precipitation 0.1 270 > th dose independent rect. 2 2
348 104.95 humidity 80.0 720 < th dose independent rect. 12 2
388 105.09 radiation 1.0 1440 > th dose independent sin 21 NA
389 105.09 humidity 80.0 10 > th dose dependent rect. 24 12
397 105.12 radiation 1.0 30 > th dose independent rect. 5 11
405 105.12 humidity 90.0 90 < th dose independent rect. 5 19
416 105.15 humidity 80.0 90 > th dose dependent rect. 11 18
419 105.17 wind 3.0 270 < th dose dependent rect. 23 3
423 105.19 radiation 1.0 1440 < th dose dependent sin 21 NA
464 105.32 radiation 1.0 720 < th dose dependent rect. 22 21
478 105.37 humidity 70.0 10 > th dose dependent rect. 7 23
495 105.46 atmosphere 1015.0 90 < th dose independent rect. 15 14
539 105.67 precipitation 0.1 270 < th dose independent rect. 2 22
543 105.67 precipitation 0.1 270 < th dose dependent rect. 2 22
560 105.71 radiation 1.0 90 < th dose dependent rect. 24 11
562 105.74 radiation 40.0 720 < th dose dependent rect. 15 4
570 105.80 atmosphere 1000.0 270 > th dose independent rect. 24 2
576 105.82 radiation 1.0 1440 > th dose independent rect. 9 1
579 105.83 radiation 1.0 90 < th dose dependent rect. 24 8
592 105.87 atmosphere 1000.0 90 > th dose independent rect. 24 5
593 105.87 radiation 1.0 90 < th dose independent rect. 24 11
596 105.88 radiation 40.0 270 < th dose independent rect. 14 13
604 105.91 humidity 90.0 30 > th dose independent sin 8 NA
638 106.09 radiation 20.0 720 < th dose independent rect. 16 10
643 106.11 atmosphere 1015.0 90 < th dose dependent rect. 24 5
647 106.12 radiation 1.0 30 > th dose independent sin 2 NA
649 106.13 humidity 80.0 90 > th dose independent rect. 24 5
651 106.14 precipitation 0.1 270 < th dose independent rect. 3 11
654 106.14 precipitation 0.1 270 < th dose dependent rect. 3 11
656 106.15 radiation 1.0 720 < th dose independent rect. 22 21
662 106.16 precipitation 0.1 720 < th dose independent rect. 19 20
663 106.16 wind 7.0 14400 > th dose dependent rect. 15 1
666 106.16 precipitation 0.1 720 < th dose dependent rect. 19 20
670 106.17 humidity 50.0 720 > th dose dependent rect. 7 20
672 106.19 temperature 15.0 270 > th dose independent rect. 3 11
689 106.25 humidity 90.0 30 < th dose independent rect. 19 21
698 106.29 humidity 90.0 30 > th dose independent rect. 24 18
710 106.33 humidity 80.0 270 > th dose independent rect. 24 2
744 106.42 radiation 40.0 90 < th dose dependent rect. 15 14
814 106.64 temperature 10.0 270 > th dose dependent rect. 24 2
822 106.66 atmosphere 1000.0 90 > th dose independent rect. 15 14
829 106.68 radiation 1.0 30 < th dose dependent sin 2 NA
835 106.71 temperature 10.0 720 > th dose dependent rect. 4 3
862 106.77 humidity 90.0 30 > th dose independent rect. 24 12
897 106.85 radiation 1.0 30 < th dose independent sin 3 NA
923 106.88 precipitation 0.1 90 < th dose independent rect. 5 19
927 106.88 precipitation 0.1 90 < th dose dependent rect. 5 19
947 106.95 wind 9.0 270 < th dose independent rect. 14 13
949 106.95 humidity 80.0 10 > th dose dependent rect. 24 8
983 107.02 temperature 10.0 90 > th dose dependent rect. 24 5
990 107.03 radiation 1.0 1440 < th dose independent rect. 1 16