BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0507600 Os02g0507600|J065142K02
         (268 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0507600  Conserved hypothetical protein                      234   4e-62
Os11g0490300  Conserved hypothetical protein                       71   7e-13

>Os02g0507600 Conserved hypothetical protein
          Length = 268

 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 140/268 (52%), Positives = 140/268 (52%)

Query: 1   MKSLCPKPGKGGKIHPSPLGGGDGDPVXXXXXXXXXXXXXXXXXXXPEDQQVLAYLVTRC 60
           MKSLCPKPGKGGKIHPSPLGGGDGDPV                   PEDQQVLAYLVTRC
Sbjct: 1   MKSLCPKPGKGGKIHPSPLGGGDGDPVRAALRLLPAAILALATALRPEDQQVLAYLVTRC 60

Query: 61  LQGAGAAHHXXXXXXXXXXXXXXXXXXXXXXXAIGCGCFDCYTSFWSRWDCSPSRELIHD 120
           LQGAGAAHH                       AIGCGCFDCYTSFWSRWDCSPSRELIHD
Sbjct: 61  LQGAGAAHHPEREHPPARGGGGGRRRRGAHPPAIGCGCFDCYTSFWSRWDCSPSRELIHD 120

Query: 121 AIEAFEDHLAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTXXXXXXXXXXEKVHD 180
           AIEAFEDHLAAAE                              VT          EKVHD
Sbjct: 121 AIEAFEDHLAAAESSAPPSSSSSKRRDKGKRRPPPPPSPMSPKVTPAQQQPPQPAEKVHD 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDNDEKVPEDPSXXXXXXXXXXXXXXXXXXX 240
                                      SDDDNDEKVPEDPS                   
Sbjct: 181 ASPPPSSLFPPLPPPPPPAPEATTTFESDDDNDEKVPEDPSAAAAENASEGEEEEEEEEE 240

Query: 241 RKRGWADVMGMLNLRLWGIWSPAVESAT 268
           RKRGWADVMGMLNLRLWGIWSPAVESAT
Sbjct: 241 RKRGWADVMGMLNLRLWGIWSPAVESAT 268



>Os11g0490300 Conserved hypothetical protein
          Length = 248

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 12  GKIHPSP---LGGGDGDPVXXXXXXXXXXXXXXXXXXXPEDQQVLAYLVTRCLQGAGAAH 68
           GK+HPSP    G G+                        E ++VLAYLV   ++ + AA 
Sbjct: 4   GKVHPSPSPAAGAGEETAEAVLMRLLPAAVVAMAAGLGAEGKEVLAYLVLASMRSSSAAR 63

Query: 69  HXXXXXXXXXXXXXXXXXXXXXXXAIGCGCFDCYTSFWSRWDCSPS--RELIHDAIEAFE 126
                                    +GCGCF CYT++WSRWD SP   R+ IH AIEAFE
Sbjct: 64  WGQAEVGKGGGGGGSGRVGHHAPE-LGCGCFGCYTAYWSRWDGSPERDRDAIHRAIEAFE 122

Query: 127 DHLAAAE 133
           DHL+  E
Sbjct: 123 DHLSRKE 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,296,588
Number of extensions: 171033
Number of successful extensions: 422
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 3
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)