BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0504500 Os02g0504500|AK102956
         (414 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0504500  UBA-like domain containing protein                  664   0.0  
Os08g0526700  UBA-like domain containing protein                  175   6e-44

>Os02g0504500 UBA-like domain containing protein
          Length = 414

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/414 (81%), Positives = 339/414 (81%)

Query: 1   MAGLSLRCGDCGVLLRSVEEAQAHAEATNHANFSESTEAVLNLVCAACGKPCRSQTEVDL 60
           MAGLSLRCGDCGVLLRSVEEAQAHAEATNHANFSESTEAVLNLVCAACGKPCRSQTEVDL
Sbjct: 1   MAGLSLRCGDCGVLLRSVEEAQAHAEATNHANFSESTEAVLNLVCAACGKPCRSQTEVDL 60

Query: 61  HTKRTGHTEFTDKTMEAAKPIDLEAAPPKPAGEAMDVDASASAEPQEMVAPEVNKEMLAD 120
           HTKRTGHTEFTDKTMEAAKPIDLEAAPPKPAGEAMDVDASASAEPQEMVAPEVNKEMLAD
Sbjct: 61  HTKRTGHTEFTDKTMEAAKPIDLEAAPPKPAGEAMDVDASASAEPQEMVAPEVNKEMLAD 120

Query: 121 LEAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDIDEPLLVPANTITEANKPSLSP 180
           LEAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDIDEPLLVPANTITEANKPSLSP
Sbjct: 121 LEAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDIDEPLLVPANTITEANKPSLSP 180

Query: 181 EEMKIKAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLEAKRIEEDNXXXXXXXXXX 240
           EEMKIKAQ                               LLEAKRIEEDN          
Sbjct: 181 EEMKIKAQELRERARKKKEEEERRMEREREKERIRIGKELLEAKRIEEDNERKRMIELRR 240

Query: 241 XXXXXXXXXXXXXXQKLEEDKAERRRKLGLXXXXXXXXXXXXXXXXXXXXRALPVRPATK 300
                         QKLEEDKAERRRKLGL                    RALPVRPATK
Sbjct: 241 LEKEEEKRAREKIRQKLEEDKAERRRKLGLPPEDPAAPKPSAPPPVEEKKRALPVRPATK 300

Query: 301 AERMRDCLRNLKQQNKDDDAKVKRAFQTLLTYIGNVAKNPDEEKFRKIRLTNATFQERVG 360
           AERMRDCLRNLKQQNKDDDAKVKRAFQTLLTYIGNVAKNPDEEKFRKIRLTNATFQERVG
Sbjct: 301 AERMRDCLRNLKQQNKDDDAKVKRAFQTLLTYIGNVAKNPDEEKFRKIRLTNATFQERVG 360

Query: 361 NLHGGIEFLQLCGFEKLEGNEFLFLARDKVDKAVLNTAGAELNSAITNPFFGVL 414
           NLHGGIEFLQLCGFEKLEGNEFLFLARDKVDKAVLNTAGAELNSAITNPFFGVL
Sbjct: 361 NLHGGIEFLQLCGFEKLEGNEFLFLARDKVDKAVLNTAGAELNSAITNPFFGVL 414



>Os08g0526700 UBA-like domain containing protein
          Length = 432

 Score =  175 bits (443), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 117/195 (60%), Gaps = 5/195 (2%)

Query: 220 LLEAKRIEEDNXXXXXXXXXXXXXXXXXXXXXXXXQKLEEDKAERRRKLGLXXXXXXXXX 279
           L+EAKR  E+N                        +++E+DKAERRR+LGL         
Sbjct: 192 LMEAKRTLEENQRKRVMESRKADQEEEKRTRERIRKRIEDDKAERRRRLGLPMENPVASV 251

Query: 280 XXXXXXXXXXXRALPVRPATKAERMRDCLRNLKQQNKDDDAKVKRAFQTLLTYIGNVAKN 339
                      +  PV PA   E++RDCLRNLK+  KDD  KV RAFQ LL  I N+ KN
Sbjct: 252 PTLTPT-----KIKPVEPAVSPEQLRDCLRNLKKNYKDDTTKVTRAFQILLKIIANIVKN 306

Query: 340 PDEEKFRKIRLTNATFQERVGNLHGGIEFLQLCGFEKLEGNEFLFLARDKVDKAVLNTAG 399
           P+EEKFR+IRL N  F+ERVGNL GG+EFL+LCGF KL  + +L + RD ++ A+LN AG
Sbjct: 307 PEEEKFRRIRLNNPVFKERVGNLQGGVEFLELCGFMKLAISGYLVMPRDNINLALLNAAG 366

Query: 400 AELNSAITNPFFGVL 414
            E+ SA+ NP+FG+L
Sbjct: 367 VEVASAMENPYFGLL 381




 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 108 MVAPEVNKEMLADLEAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDIDEPLLVP 166
           M  P+++K +L++LE MGF TAR+ RALHFSGNS++E AINWL EH+ DPDID+  L+P
Sbjct: 36  MATPQLDKRILSELELMGFPTARSIRALHFSGNSSLESAINWLLEHENDPDIDQLPLIP 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,994,308
Number of extensions: 397873
Number of successful extensions: 1061
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1056
Number of HSP's successfully gapped: 3
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)