Os02g0504500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UBA-like domain containing protein.
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Os02g0504500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UBA-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.86 | 0.273 | 10.7 | -0.518 | 0.194 | -1.29 | -0.412 | 0.828 | 0.163 | 5.61 | 24.55 | 2571 | -- | -- |
| 34.38 | 0.273 | 10.6 | -0.397 | 0.191 | -1.44 | -0.366 | -- | 0.198 | 4.99 | 23.76 | 2675 | -- | -- |
| 34.1 | 0.272 | 10.7 | -0.518 | 0.194 | -1.32 | -- | 0.765 | 0.168 | 4.97 | 24.03 | 2668 | -- | -- |
| 34.81 | 0.275 | 10.6 | -0.385 | 0.192 | -1.45 | -- | -- | 0.2 | 5.02 | 23.7 | 2674 | -- | -- |
| 35.97 | 0.279 | 10.7 | -0.54 | -- | -1.34 | -- | 0.834 | 0.159 | -- | 24.41 | 2675 | -- | -- |
| 67.97 | 0.386 | 10.6 | 0.23 | 0.269 | -- | -0.534 | -- | 0.552 | 4.44 | -- | -- | -- | -- |
| 68.72 | 0.388 | 10.6 | 0.234 | 0.265 | -- | -- | -- | 0.555 | 4.17 | -- | -- | -- | -- |
| 36.72 | 0.282 | 10.7 | -0.383 | -- | -1.46 | -- | -- | 0.197 | -- | 23.9 | 2674 | -- | -- |
| 37.69 | 0.286 | 10.6 | -- | 0.209 | -1.23 | -- | -- | 0.28 | 5.27 | 24 | 2576 | -- | -- |
| 72.53 | 0.398 | 10.6 | 0.244 | -- | -- | -- | -- | 0.562 | -- | -- | -- | -- | -- |
| 70.16 | 0.392 | 10.6 | -- | 0.27 | -- | -- | -- | 0.529 | 4.16 | -- | -- | -- | -- |
| 39.65 | 0.293 | 10.6 | -- | -- | -1.25 | -- | -- | 0.277 | -- | 24.1 | 2626 | -- | -- |
| 74.1 | 0.402 | 10.6 | -- | -- | -- | -- | -- | 0.535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.44 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 2 | 32.45 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 3 | 32.46 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 9 | 32.52 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 62 | 32.77 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 143 | 33.02 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 9 | NA |
| 200 | 33.17 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 212 | 33.19 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 257 | 33.34 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 258 | 33.34 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 9 | NA |
| 360 | 33.66 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 361 | 33.66 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 390 | 33.73 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 399 | 33.77 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 407 | 33.77 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 416 | 33.83 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 420 | 33.85 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 426 | 33.88 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 439 | 33.92 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 442 | 33.93 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 547 | 34.17 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 589 | 34.32 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 629 | 34.42 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 637 | 34.44 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 645 | 34.46 | temperature | 20.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 646 | 34.46 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 687 | 34.53 | temperature | 20.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 689 | 34.53 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 690 | 34.53 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 710 | 34.56 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 813 | 34.78 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 818 | 34.79 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 890 | 34.94 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 894 | 34.94 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 914 | 34.99 | radiation | 1.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 939 | 35.03 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 953 | 35.04 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 974 | 35.05 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 983 | 35.06 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 993 | 35.08 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 17 | 14 |