BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0504500 Os02g0504500|AK102956
(414 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04850.1 | chr1:1365311-1368706 REVERSE LENGTH=414 473 e-134
AT5G48690.1 | chr5:19747270-19748968 REVERSE LENGTH=324 187 1e-47
AT2G01650.1 | chr2:284851-286394 REVERSE LENGTH=459 59 4e-09
AT3G20630.1 | chr3:7203001-7208340 REVERSE LENGTH=798 52 4e-07
>AT1G04850.1 | chr1:1365311-1368706 REVERSE LENGTH=414
Length = 413
Score = 473 bits (1216), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/416 (58%), Positives = 290/416 (69%), Gaps = 5/416 (1%)
Query: 1 MAGLSLRCGDCGVLLRSVEEAQAHAEATNHANFSESTEAVLNLVCAACGKPCRSQTEVDL 60
MAG+SL+CGDCG LL+SVEEAQ HAE T+H+NF+ESTEAVLNLVC C KPCRS+ E DL
Sbjct: 1 MAGVSLKCGDCGTLLKSVEEAQEHAELTSHSNFAESTEAVLNLVCTTCTKPCRSKIESDL 60
Query: 61 HTKRTGHTEFTDKTMEAAKPIDLEAAPPKPAGEAMDVDASASAEP-QEMVAPEVNKEMLA 119
HTKRTGHTEF DKT+E KPI LEA PK A E +D +AS S E +EMV P+V+ +L
Sbjct: 61 HTKRTGHTEFVDKTLETIKPISLEA--PKVAME-IDDNASGSGEAAEEMVVPDVDNNILE 117
Query: 120 DLEAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDIDEPLLVPANTITEANKPSLS 179
+LEAMGF ARATRALH+SGN+++E A+NW+ EH+ DPD+DE VP+N+ KP+L+
Sbjct: 118 ELEAMGFPKARATRALHYSGNASLEAAVNWVVEHENDPDVDEMPKVPSNSNVGPAKPALT 177
Query: 180 PEEMKIKAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLEAKRIEEDNXXXXXXXXX 239
PEE+K+KAQ LLEAKR+EE N
Sbjct: 178 PEEVKLKAQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRMEEVNERKRLMFLR 237
Query: 240 XXXXXXXXXXXXXXXQKLEEDKAERRRKLGLXXXXXXXXXXXXXXXXXXXXRA-LPVRPA 298
QKLEEDKAERRRKLGL + LP+RPA
Sbjct: 238 KAEKEEEKRAREKIRQKLEEDKAERRRKLGLPPEDPATAAAKPSVPVVEEKKVTLPIRPA 297
Query: 299 TKAERMRDCLRNLKQQNKDDDAKVKRAFQTLLTYIGNVAKNPDEEKFRKIRLTNATFQER 358
TK E+MR+CLR+LKQ +K+DDAKVKRAFQTLLTY+GNVAKNPDEEKFRKIRLTN TFQER
Sbjct: 298 TKTEQMRECLRSLKQAHKEDDAKVKRAFQTLLTYMGNVAKNPDEEKFRKIRLTNQTFQER 357
Query: 359 VGNLHGGIEFLQLCGFEKLEGNEFLFLARDKVDKAVLNTAGAELNSAITNPFFGVL 414
VG+L GGIEF++LCGFEK+EG EFLFL RDK+D A++N+AG ELNSAI NPFFGVL
Sbjct: 358 VGSLRGGIEFMELCGFEKIEGGEFLFLPRDKIDSAIINSAGTELNSAINNPFFGVL 413
>AT5G48690.1 | chr5:19747270-19748968 REVERSE LENGTH=324
Length = 323
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 161/312 (51%), Gaps = 5/312 (1%)
Query: 107 EMVAPEVNKEMLADLEAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDIDEPLLVP 166
E A EVN +L +LE MGF+ ARA ALH SGNS++E A+NW+ +H+ + + LV
Sbjct: 6 ENAAIEVNHGLLKELEDMGFSMARAAWALHHSGNSSLEAAVNWIIDHENESQFENMPLVE 65
Query: 167 ANTITEANKPSL-SPEEMKIKAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLEAKR 225
N E+ PS + E +A+ L+E KR
Sbjct: 66 FNIEIESPNPSDDTAETSHARAKELSEQARKLREEQETKREREREKERIRAGKELMETKR 125
Query: 226 IEEDNXXXXXXXXXXXXXXXXXXXXXXXXQKLEEDKAERRRKLGLXXXXXXXXXXXXXXX 285
I E+N K+ DK ER+R+LGL
Sbjct: 126 IAEENERKRNIALRKAEKDEEKKAREKIMLKVNADKLERKRRLGLPTETESASTSNPVSP 185
Query: 286 XXXXXRALPVRPA--TKAERMRDCLRNLKQQNKDDDAKV-KRAFQTLLTYIGNVAKNPDE 342
R + P+ +KAE MR+CLR+L++ +KD+D ++ +R F+TLLT + NVAK PDE
Sbjct: 186 LDPK-RIVMSSPSVVSKAEEMRECLRSLRRNHKDEDPRITRRVFETLLTIVRNVAKKPDE 244
Query: 343 EKFRKIRLTNATFQERVGNLHGGIEFLQLCGFEKLEGNEFLFLARDKVDKAVLNTAGAEL 402
E++R+IRL N F ERVG GIEF++LCGF+++EG+EFL L++ D L A L
Sbjct: 245 ERYRRIRLKNRLFHERVGRYKEGIEFMELCGFKRVEGSEFLSLSKRDSDINRLRDAAFLL 304
Query: 403 NSAITNPFFGVL 414
NSA NPFFG+L
Sbjct: 305 NSASANPFFGLL 316
>AT2G01650.1 | chr2:284851-286394 REVERSE LENGTH=459
Length = 458
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 325 AFQTLLTYIGNVAKNPDEEKFRKIRLTNATFQERVGNLHGGIEFLQLCGFEKLEGNEFLF 384
+ LL N+ K P+ KFRK+R++NA +E +G++ GG+E L+L GFE E N+ ++
Sbjct: 182 SIDVLLRLFKNIVKEPENAKFRKVRMSNAKIKEAIGDVAGGVELLELVGFELKEENDEIW 241
Query: 385 LARD 388
D
Sbjct: 242 AVMD 245
>AT3G20630.1 | chr3:7203001-7208340 REVERSE LENGTH=798
Length = 797
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 104 EPQEMVAPEVNKEMLADLEAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDIDEPL 163
E E P N+E++A L +MGF+ +A + N+ +E A+NWL H +DPDID P+
Sbjct: 605 EVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPI 664
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,051,033
Number of extensions: 253589
Number of successful extensions: 548
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 4
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)