BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0469200 Os02g0469200|AK066401
(689 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0469200 Conserved hypothetical protein 1317 0.0
Os03g0570200 Conserved hypothetical protein 413 e-115
Os06g0585200 Conserved hypothetical protein 80 5e-15
>Os02g0469200 Conserved hypothetical protein
Length = 689
Score = 1317 bits (3409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 644/689 (93%), Positives = 644/689 (93%)
Query: 1 MVIGFSESEINLLRENKTLQARILQSKSDKRLYLDIEKGVNRRPLYESHPLSSFSWTTSD 60
MVIGFSESEINLLRENKTLQARILQSKSDKRLYLDIEKGVNRRPLYESHPLSSFSWTTSD
Sbjct: 1 MVIGFSESEINLLRENKTLQARILQSKSDKRLYLDIEKGVNRRPLYESHPLSSFSWTTSD 60
Query: 61 NMDMGDWSKKCKEALSNFELLKEGKSKDDIIYDKAVQVLHGKKDELHDIFESALKSSDLK 120
NMDMGDWSKKCKEALSNFELLKEGKSKDDIIYDKAVQVLHGKKDELHDIFESALKSSDLK
Sbjct: 61 NMDMGDWSKKCKEALSNFELLKEGKSKDDIIYDKAVQVLHGKKDELHDIFESALKSSDLK 120
Query: 121 GLHAECLTDMWIGRDRFAFIDLSAGPFAWGPAVGGDGVRTELSLPNVAKTVGXXXXXXXX 180
GLHAECLTDMWIGRDRFAFIDLSAGPFAWGPAVGGDGVRTELSLPNVAKTVG
Sbjct: 121 GLHAECLTDMWIGRDRFAFIDLSAGPFAWGPAVGGDGVRTELSLPNVAKTVGAVAEVIEE 180
Query: 181 XXXXKLQDTIRERFSSFGENYHAVDILLAEIDVYELFAFKHCVGRRVQLALCKELDERMH 240
KLQDTIRERFSSFGENYHAVDILLAEIDVYELFAFKHCVGRRVQLALCKELDERMH
Sbjct: 181 EAEAKLQDTIRERFSSFGENYHAVDILLAEIDVYELFAFKHCVGRRVQLALCKELDERMH 240
Query: 241 DLKSELEGYNTGDSDDINKKKALDALNRMEKWNLFKDVPEEHHSYTVARDSFLAHLGSVL 300
DLKSELEGYNTGDSDDINKKKALDALNRMEKWNLFKDVPEEHHSYTVARDSFLAHLGSVL
Sbjct: 241 DLKSELEGYNTGDSDDINKKKALDALNRMEKWNLFKDVPEEHHSYTVARDSFLAHLGSVL 300
Query: 301 WGSMSHVIAPSVSHRAHHYYDKLSFQLYFVTQEKVRNMKQFPVNVKSVTEGLSSVLLQFQ 360
WGSMSHVIAPSVSHRAHHYYDKLSFQLYFVTQEKVRNMKQFPVNVKSVTEGLSSVLLQFQ
Sbjct: 301 WGSMSHVIAPSVSHRAHHYYDKLSFQLYFVTQEKVRNMKQFPVNVKSVTEGLSSVLLQFQ 360
Query: 361 KPMFSQRMLSLSEDPXXXXXXXXXXXXXXVPLLLVNGTYKSTVHTYLDSAILQHQLQRLS 420
KPMFSQRMLSLSEDP VPLLLVNGTYKSTVHTYLDSAILQHQLQRLS
Sbjct: 361 KPMFSQRMLSLSEDPALMMAFSMARRAAAVPLLLVNGTYKSTVHTYLDSAILQHQLQRLS 420
Query: 421 EHNSLKGGHSNHRSTLEIPIFWFIHSEPLLLDKHYQAKSLSNMVVVVQSEVDSWESHLQC 480
EHNSLKGGHSNHRSTLEIPIFWFIHSEPLLLDKHYQAKSLSNMVVVVQSEVDSWESHLQC
Sbjct: 421 EHNSLKGGHSNHRSTLEIPIFWFIHSEPLLLDKHYQAKSLSNMVVVVQSEVDSWESHLQC 480
Query: 481 NGRSILWDLRRPVKAAIAATAEYVSGLLPSHLAYSPAHETATEDWTWSVGCNPLSITSKG 540
NGRSILWDLRRPVKAAIAATAEYVSGLLPSHLAYSPAHETATEDWTWSVGCNPLSITSKG
Sbjct: 481 NGRSILWDLRRPVKAAIAATAEYVSGLLPSHLAYSPAHETATEDWTWSVGCNPLSITSKG 540
Query: 541 WQLSEFQRDVIARNYIITAVEESIQIINSAIQQLITERTSERGFKLFKAQERVLVEKYNS 600
WQLSEFQRDVIARNYIITAVEESIQIINSAIQQLITERTSERGFKLFKAQERVLVEKYNS
Sbjct: 541 WQLSEFQRDVIARNYIITAVEESIQIINSAIQQLITERTSERGFKLFKAQERVLVEKYNS 600
Query: 601 VVSLWRRVSAMSKGLRYGDAVKLTSMLEEASHGFANAVNSTISSLHPVQCTRERKVDVQL 660
VVSLWRRVSAMSKGLRYGDAVKLTSMLEEASHGFANAVNSTISSLHPVQCTRERKVDVQL
Sbjct: 601 VVSLWRRVSAMSKGLRYGDAVKLTSMLEEASHGFANAVNSTISSLHPVQCTRERKVDVQL 660
Query: 661 DLTTIXXXXXXXXXXXXXXXXXXXKPKIN 689
DLTTI KPKIN
Sbjct: 661 DLTTIPAFLAVFLLLWFLLRPRRPKPKIN 689
>Os03g0570200 Conserved hypothetical protein
Length = 495
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/246 (84%), Positives = 211/246 (85%), Gaps = 5/246 (2%)
Query: 185 KLQDTIRERFSSFGENYHAVDILLAEIDVYELFAFKHCVGRRVQLALCKELDERMHDLKS 244
KLQDTIRE + VDILLAEIDVYELFAFKHCVGRRVQLALCKELDER HDLKS
Sbjct: 223 KLQDTIREILI-----FWRVDILLAEIDVYELFAFKHCVGRRVQLALCKELDERRHDLKS 277
Query: 245 ELEGYNTGDSDDINKKKALDALNRMEKWNLFKDVPEEHHSYTVARDSFLAHLGSVLWGSM 304
ELEGYNTGDSDDINKKKALDALNRMEKWNLFKDVPEEHHSYTVARDSFLAHLGSVLWGSM
Sbjct: 278 ELEGYNTGDSDDINKKKALDALNRMEKWNLFKDVPEEHHSYTVARDSFLAHLGSVLWGSM 337
Query: 305 SHVIAPSVSHRAHHYYDKLSFQLYFVTQEKVRNMKQFPVNVKSVTEGLSSVLLQFQKPMF 364
HVIAPSVSHRAHHYYDKL FQLYFVTQEKVRN+KQ PVNVKSVTEGLSSVLLQFQKPMF
Sbjct: 338 RHVIAPSVSHRAHHYYDKLLFQLYFVTQEKVRNIKQLPVNVKSVTEGLSSVLLQFQKPMF 397
Query: 365 SQRMLSLSEDPXXXXXXXXXXXXXXVPLLLVNGTYKSTVHTYLDSAILQHQLQRLSEHNS 424
SQ MLSLSEDP VPLLLVNG KSTVHTYLDSAILQHQLQRLSEHN
Sbjct: 398 SQHMLSLSEDPALIMAFAMARRAAAVPLLLVNGFSKSTVHTYLDSAILQHQLQRLSEHNL 457
Query: 425 LKGGHS 430
LK S
Sbjct: 458 LKATPS 463
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/138 (73%), Positives = 105/138 (76%), Gaps = 33/138 (23%)
Query: 35 DIEKGVNRRPLYESHPLSSFSWTTSDNMDMGDWSKKCKEALSNFELLKEGKSKDDIIYDK 94
+IEKGVNRRPLYESHPLSSFSWTT+DNMDM
Sbjct: 32 NIEKGVNRRPLYESHPLSSFSWTTTDNMDM------------------------------ 61
Query: 95 AVQVLHGKKDELHDIFESALKSSDLKGLHAECLTDMWIGRDRFAFIDLSAGPFAWGPAVG 154
VLHGKKDELHDIFESALKSSDLKGLHAECLTDMWIGRDRFAFIDLSAGPFAWGPAVG
Sbjct: 62 ---VLHGKKDELHDIFESALKSSDLKGLHAECLTDMWIGRDRFAFIDLSAGPFAWGPAVG 118
Query: 155 GDGVRTELSLPNVAKTVG 172
GDGVRTELSLPNVAKT+G
Sbjct: 119 GDGVRTELSLPNVAKTIG 136
>Os06g0585200 Conserved hypothetical protein
Length = 551
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 399 YKSTVHTYLDSAILQHQLQ-RLSEHNSLKGGHSNHRSTLEIPIFWFIHSEPLLLD--KHY 455
Y V YLDS ++ L L E + + G H N +P+F F LL +++
Sbjct: 259 YTLIVSEYLDSKRMRQVLSDSLEELHKVAGVHDNDDYDKVVPVFVFDLDYDKLLLLDRYH 318
Query: 456 QAKSLSNMVVVVQSEVDSWESHLQCNGRSILWDLRRPVKAAIAATAEYVSGLLPSHLAYS 515
QA + +MV+ V++ S CNGR ++ R + IA+ + + G+ P+H ++S
Sbjct: 319 QAVAFRDMVISVRTRSSQTVSDYSCNGRHVITMTRNLDRPIIASVLQSMWGVSPTHQSWS 378
Query: 516 PAHETATEDWTWSVGCNPLSITSKGWQLSEFQRDVIARNYIITAVEESIQIINSAIQQLI 575
P H D+TWS G P S+ LS Q+D RN ++T + + I SAI L
Sbjct: 379 PEHNATVVDYTWSTGHTPFGPFSETKSLSFVQKDAARRNVLLTTLNYT---ITSAIDVL- 434
Query: 576 TERTSERGFK--LFKAQERV-LVEKYNSVV-SLWRRVSAMSKGLRYGDAV 621
E + G + L + + RV ++++N + L + VSAMS+ L Y A+
Sbjct: 435 -ESMAAHGGESILLRRKRRVEFIQRWNLLTYKLEKVVSAMSR-LDYNKAM 482
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,462,759
Number of extensions: 804308
Number of successful extensions: 1960
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1960
Number of HSP's successfully gapped: 4
Length of query: 689
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 581
Effective length of database: 11,396,689
Effective search space: 6621476309
Effective search space used: 6621476309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)