BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0468400 Os02g0468400|AK120593
(435 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0468400 Lipid-binding START domain containing protein 739 0.0
Os07g0185200 Similar to Membrane related protein-like 140 1e-33
Os04g0119500 Similar to Membrane related protein-like 132 4e-31
>Os02g0468400 Lipid-binding START domain containing protein
Length = 435
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/435 (83%), Positives = 362/435 (83%)
Query: 1 MAGETDSTPMXXXXXXXXXXXXXXXXXXXXXXXXXXWRPVARGGGWATXXXXXXXXXXXX 60
MAGETDSTPM WRPVARGGGWAT
Sbjct: 1 MAGETDSTPMAAGRAVPPPPEAAAPRLLLLGGGAELWRPVARGGGWATAAALLLLLASHL 60
Query: 61 XXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXPGSAAGMDGLVTEGDLRELVGNLG 120
P PGSAAGMDGLVTEGDLRELVGNLG
Sbjct: 61 SVLLLRRLRLRRRLRPADAVSSSSAAAAAVVTADSAPGSAAGMDGLVTEGDLRELVGNLG 120
Query: 121 VAAREPEREGWQQVVAKGNDDVSYRVWCDKPMEGPPRYLSVTTYERCSTELLRDFYMDNE 180
VAAREPEREGWQQVVAKGNDDVSYRVWCDKPMEGPPRYLSVTTYERCSTELLRDFYMDNE
Sbjct: 121 VAAREPEREGWQQVVAKGNDDVSYRVWCDKPMEGPPRYLSVTTYERCSTELLRDFYMDNE 180
Query: 181 YRMEWDNTVIKHEQLQFDENSGIEIGRTIKKFPLLTPREYILAWRVWEGNDKSFYCLVKE 240
YRMEWDNTVIKHEQLQFDENSGIEIGRTIKKFPLLTPREYILAWRVWEGNDKSFYCLVKE
Sbjct: 181 YRMEWDNTVIKHEQLQFDENSGIEIGRTIKKFPLLTPREYILAWRVWEGNDKSFYCLVKE 240
Query: 241 CEHPVAPRQRKFVRVQLLRSGWCIRKIPGRDACRITVLHHEDNGMNIEMAKLAFAKGIWN 300
CEHPVAPRQRKFVRVQLLRSGWCIRKIPGRDACRITVLHHEDNGMNIEMAKLAFAKGIWN
Sbjct: 241 CEHPVAPRQRKFVRVQLLRSGWCIRKIPGRDACRITVLHHEDNGMNIEMAKLAFAKGIWN 300
Query: 301 YICKMNSALRRYPQRNISSISILTMQRLTKKFPQALETDVDANHHPQGNTRANVVPTHFA 360
YICKMNSALRRYPQRNISSISILTMQRLTKKFPQALETDVDANHHPQGNTRANVVPTHFA
Sbjct: 301 YICKMNSALRRYPQRNISSISILTMQRLTKKFPQALETDVDANHHPQGNTRANVVPTHFA 360
Query: 361 RTSSRQQPGKKSSRATIASGLLLIGSIVCLSRGRSNLGAQLAMAFFLKKAFKQDKGSSSQ 420
RTSSRQQPGKKSSRATIASGLLLIGSIVCLSRGRSNLGAQLAMAFFLKKAFKQDKGSSSQ
Sbjct: 361 RTSSRQQPGKKSSRATIASGLLLIGSIVCLSRGRSNLGAQLAMAFFLKKAFKQDKGSSSQ 420
Query: 421 RSISRTDVTEPRHLE 435
RSISRTDVTEPRHLE
Sbjct: 421 RSISRTDVTEPRHLE 435
>Os07g0185200 Similar to Membrane related protein-like
Length = 395
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 145/280 (51%), Gaps = 22/280 (7%)
Query: 102 GMDGLVTEGDLRELVGNLGVAAREPEREGWQQVVAKGNDDVSYRVWCDKPMEGPPRYLSV 161
G +VTE DL LV L +E WQ ++ + +++Y+ W +P GP Y S
Sbjct: 87 GGHHVVTEKDLEHLVQLLD--NKESGDTTWQHLMERTTSNMTYKAWRREPEVGPIMYCSR 144
Query: 162 TTYERCSTELLRDFYMDNEYRMEWDNTVIKHEQLQFDENSGIEIGRTIKKFPLL-TPREY 220
T +E + EL+RDF+ D+E+R++WD + + L+ +G I IKKFP + REY
Sbjct: 145 TIFEDATPELVRDFFWDDEFRLKWDPMLAYFKILEEFPQNGTMIIHWIKKFPFFCSDREY 204
Query: 221 ILAWRVWEGNDKSFYCLVKECEHPVAPRQRKFVRVQLLRSGWCIRKI--PGRD----ACR 274
I R+WE + K++YC+ K +P P++ K RV+L S W IR + P +D AC
Sbjct: 205 IFGRRIWE-SGKTYYCVTKGVPYPALPKKEKPRRVELYFSSWRIRAVQSPKQDGQQSACE 263
Query: 275 ITVLHHEDNGMNIEMAKLAFAKGIWNYICKMNSALRRYPQ----RNISSISILTMQRLTK 330
+T++H+ED G+ ++AK+ G+W + K S R Y Q N S S + M R+T
Sbjct: 264 VTLVHYEDMGIPKDVAKVGVRHGMWGAVKKFQSGFRAYQQMRDTENTLSRSAI-MARVTT 322
Query: 331 KFPQALETDVDANHHPQGNTRANVVPTHFARTSSRQ-QPG 369
K T + ++ P +N T +SR QPG
Sbjct: 323 K------TSIASSSCPLDQEPSNAAKTIDESENSRAVQPG 356
>Os04g0119500 Similar to Membrane related protein-like
Length = 400
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 130 GWQQVVAKGNDDVSYRVWCDKPMEGPPRYLSVTTYERCSTELLRDFYMDNEYRME--WDN 187
W ++ K + Y+ W P GPP+Y S T +E S E++RDF+ D+E+R++ WD+
Sbjct: 116 AWIHMMDKTLPTMRYQAWRRDPEGGPPQYRSSTIFEDASPEVVRDFFWDDEFRIKNTWDD 175
Query: 188 TVIKHEQLQFDENSGIEIGRTIKKFPLL-TPREYILAWRVWEGNDKSFYCLVKECEHPVA 246
+++H+ L+ +G + R ++KFP + REYI+ R+W + K++YC+ K P
Sbjct: 176 MLLQHDTLEECTKTGTMVLRWVRKFPFFCSDREYIIGRRIW-ASGKTYYCVTKGVPRPSV 234
Query: 247 PRQRKFVRVQLLRSGWCIRKIPGRD------ACRITVLHHEDNGMNIEMAKLAFAKGIWN 300
PR K RV + S WCIR + R+ AC + + HHE+ G+ E+AKL +G+W
Sbjct: 235 PRCNKPRRVDVYYSSWCIRPVESRNGDGSMTACEVLLFHHEEMGIPREIAKLGVRQGMWG 294
Query: 301 YICKMNSALRRY 312
+ ++ LR Y
Sbjct: 295 CVKRIEPGLRAY 306
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,810,095
Number of extensions: 502779
Number of successful extensions: 882
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 3
Length of query: 435
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 331
Effective length of database: 11,605,545
Effective search space: 3841435395
Effective search space used: 3841435395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)