Os07g0185200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Membrane related protein-like.
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Os07g0185200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Membrane related protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.91 | 0.358 | 11.5 | -0.636 | 0.167 | -0.77 | -2.86 | 0.879 | -0.0952 | 10.1 | 0.9485 | 49 | -- | -- |
| 58.58 | 0.356 | 11.5 | -0.664 | 0.152 | -0.769 | -1.97 | -- | -0.103 | 9.64 | 0.9549 | 54 | -- | -- |
| 66.66 | 0.38 | 11.5 | -0.69 | 0.264 | -0.869 | -- | -1.05 | -0.0781 | 9.93 | 1.29 | 49 | -- | -- |
| 73.04 | 0.398 | 11.5 | -0.746 | 0.174 | -0.766 | -- | -- | -0.106 | 10.8 | 0.96 | 51 | -- | -- |
| 64.47 | 0.374 | 11.5 | -0.763 | -- | -0.663 | -- | -1.14 | -0.0778 | -- | 2.51 | 55 | -- | -- |
| 73.29 | 0.401 | 11.5 | -0.721 | 0.744 | -- | 1.61 | -- | -0.125 | 23.8 | -- | -- | -- | -- |
| 83.86 | 0.429 | 11.5 | -0.789 | 0.745 | -- | -- | -- | -0.135 | 0.354 | -- | -- | -- | -- |
| 73.42 | 0.399 | 11.5 | -0.784 | -- | -0.647 | -- | -- | -0.0776 | -- | 2.47 | 47 | -- | -- |
| 88.35 | 0.438 | 11.5 | -- | 0.167 | -0.732 | -- | -- | -0.0466 | 10.4 | 0.8 | 51 | -- | -- |
| 118.73 | 0.509 | 11.5 | -0.764 | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
| 100.25 | 0.468 | 11.5 | -- | 0.734 | -- | -- | -- | -0.0469 | 0.298 | -- | -- | -- | -- |
| 88.71 | 0.439 | 11.5 | -- | -- | -0.66 | -- | -- | -0.0346 | -- | 0.8 | 51 | -- | -- |
| 134.12 | 0.541 | 11.5 | -- | -- | -- | -- | -- | -0.0381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.97 | radiation | 1 | 30 | > th | dose independent | no | NA | NA |
| 2 | 58.97 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 14 |
| 57 | 58.98 | radiation | 1 | 30 | < th | dose independent | no | NA | NA |
| 58 | 58.98 | radiation | 1 | 30 | < th | dose independent | rect. | 11 | 21 |
| 61 | 58.98 | radiation | 1 | 30 | < th | dose independent | rect. | 7 | 23 |
| 65 | 58.98 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 23 |
| 66 | 58.98 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 23 |
| 67 | 58.98 | radiation | 1 | 30 | < th | dose dependent | no | NA | NA |
| 68 | 58.98 | radiation | 1 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 74 | 58.98 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 75 | 58.98 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 76 | 59.00 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 77 | 59.01 | radiation | 1 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 78 | 59.03 | radiation | 1 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 79 | 59.05 | radiation | 1 | 30 | < th | dose independent | rect. | 17 | 23 |
| 80 | 59.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 84 | 59.33 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 19 |
| 92 | 59.38 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 219 | 60.13 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 21 |
| 244 | 60.32 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 21 |
| 254 | 60.45 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 17 |
| 272 | 60.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 285 | 60.61 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 23 |
| 294 | 60.69 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 413 | 61.10 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 11 |
| 424 | 61.16 | radiation | 1 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 426 | 61.17 | radiation | 1 | 90 | < th | dose independent | rect. | 21 | 23 |
| 436 | 61.25 | temperature | 25 | 30 | > th | dose independent | rect. | 5 | 13 |
| 498 | 61.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 535 | 61.69 | radiation | 1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 546 | 61.74 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 551 | 61.75 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 15 |
| 558 | 61.76 | radiation | 1 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 594 | 61.85 | humidity | 80 | 10 | < th | dose independent | rect. | 22 | 20 |
| 605 | 61.92 | radiation | 1 | 30 | > th | dose independent | rect. | 9 | 23 |
| 622 | 61.95 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 23 |
| 627 | 61.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 638 | 61.98 | radiation | 1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 649 | 62.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 20 |
| 691 | 62.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 723 | 62.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 778 | 62.44 | radiation | 1 | 30 | > th | dose independent | sin | 0 | NA |
| 842 | 62.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 866 | 62.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 887 | 62.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 907 | 62.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 910 | 62.82 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 13 |
| 944 | 62.87 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 9 |
| 971 | 62.92 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 19 |
| 986 | 62.94 | temperature | 20 | 10 | > th | dose dependent | sin | 21 | NA |
| 991 | 62.95 | humidity | 80 | 10 | < th | dose independent | sin | 22 | NA |