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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0468400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipid-binding START domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.75 (0.0363) R2 : 0.791
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.88 (0.107) R2dC : 0.498 R2C : -0.338
β3 : 5.4 (0.135) R2dE : 1.1 R2E : 0.28
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.457 (0.0763) R2dN8 : 0.0204 R2N8 : 0.0204
σ : 0.68
deviance : 213.4
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C
peak time of C : 10.1
E
wheather : temperature
threshold : 41.54
memory length : 334
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.2
open length of G : 14.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.54 0.655 4.74 -0.324 2.5 4.88 -0.623 -2.81 -0.437 9.37 37.77 314 15.5 14.8
207.59 0.671 4.78 -0.384 2.72 5 0.896 -- -0.533 9.75 40.56 308 15.5 14.9
193.82 0.648 4.74 -0.32 2.62 4.89 -- -2.36 -0.447 9.45 39.33 308 15.4 14.9
207.19 0.67 4.75 -0.498 2.9 5.31 -- -- -0.546 10.1 42.75 335 15.3 14.7
280.23 0.78 4.86 -0.784 -- 4.31 -- -1.19 -0.566 -- 46.33 480 19.4 10.6
318.55 0.837 4.83 -0.858 3.54 -- -1.29 -- -0.719 4.84 -- -- -- --
322.8 0.841 4.82 -0.853 3.53 -- -- -- -0.712 4.88 -- -- -- --
280.86 0.781 4.81 -0.585 -- 4.54 -- -- -0.443 -- 39.64 470 19.4 10.6
213.4 0.68 4.75 -- 2.88 5.4 -- -- -0.457 10.1 41.54 334 15.2 14.8
981.67 1.46 4.86 -0.722 -- -- -- -- -0.621 -- -- -- -- --
341.97 0.865 4.8 -- 3.52 -- -- -- -0.617 4.88 -- -- -- --
289.23 0.792 4.8 -- -- 4.63 -- -- -0.392 -- 38.13 466 19.4 10.6
995.42 1.47 4.84 -- -- -- -- -- -0.541 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 208.75 temperature 30.0 270 < th dose dependent rect. 15 16
2 208.85 temperature 15.0 270 > th dose dependent rect. 19 8
12 213.95 temperature 25.0 270 < th dose independent rect. 15 16
78 225.72 temperature 25.0 720 < th dose independent rect. 15 9
79 225.77 temperature 25.0 720 < th dose independent sin 16 NA
85 226.88 temperature 25.0 720 < th dose independent rect. 15 7
175 231.93 temperature 25.0 720 > th dose independent rect. 15 8
193 232.76 temperature 20.0 90 > th dose independent rect. 21 7
259 235.40 temperature 25.0 720 > th dose independent rect. 16 2
309 237.17 radiation 1.0 720 < th dose dependent rect. 16 8
347 238.39 temperature 20.0 90 > th dose independent rect. 9 19
355 238.80 temperature 20.0 30 > th dose independent rect. 11 17
378 239.34 temperature 30.0 720 < th dose dependent rect. 17 4
400 240.46 temperature 30.0 720 < th dose dependent rect. 19 1
481 242.48 temperature 20.0 270 > th dose independent rect. 9 17
501 243.19 temperature 20.0 270 > th dose independent rect. 22 3
541 244.13 radiation 1.0 720 < th dose independent rect. 16 8
560 244.55 temperature 15.0 30 > th dose dependent rect. 11 17
606 245.69 temperature 20.0 10 > th dose independent rect. 22 16
625 246.15 radiation 1.0 720 > th dose independent rect. 15 3
650 246.55 temperature 25.0 720 > th dose independent sin 16 NA
652 246.56 wind 1.0 10 > th dose independent rect. 14 21
667 246.78 wind 1.0 10 > th dose independent rect. 14 19
672 246.89 temperature 20.0 720 > th dose dependent rect. 15 8
693 247.25 temperature 10.0 90 > th dose dependent rect. 9 19
734 248.27 temperature 25.0 270 < th dose independent sin 11 NA
739 248.40 radiation 1.0 720 > th dose independent rect. 15 21
743 248.52 radiation 1.0 270 > th dose independent sin 1 NA
756 248.98 radiation 1.0 720 > th dose independent rect. 15 14
763 249.05 temperature 15.0 270 > th dose independent rect. 22 14
780 249.21 temperature 10.0 270 > th dose dependent rect. 20 16
787 249.33 temperature 10.0 10 > th dose dependent rect. 9 19
793 249.40 temperature 10.0 720 > th dose dependent rect. 15 8
806 249.69 radiation 1.0 270 < th dose independent rect. 3 16
841 250.50 wind 1.0 10 > th dose independent rect. 16 17
848 250.65 radiation 1.0 720 < th dose dependent rect. 9 15
858 250.86 radiation 1.0 720 < th dose dependent sin 14 NA
863 250.95 radiation 1.0 720 < th dose dependent sin 16 NA
865 250.98 radiation 1.0 720 < th dose dependent rect. 7 17
879 251.20 radiation 1.0 270 < th dose dependent rect. 3 16
905 251.65 radiation 1.0 720 < th dose dependent rect. 16 13
909 251.71 temperature 25.0 270 < th dose dependent sin 13 NA
936 252.29 wind 1.0 10 > th dose independent rect. 12 23
945 252.40 temperature 30.0 270 < th dose dependent rect. 21 10
963 252.71 radiation 1.0 720 < th dose independent rect. 3 21
965 252.73 precipitation 0.1 270 < th dose independent rect. 22 14
966 252.73 precipitation 0.1 270 < th dose dependent rect. 22 14
987 253.11 atmosphere 1015.0 270 < th dose independent rect. 22 14
996 253.28 radiation 1.0 720 < th dose independent rect. 16 14
998 253.30 radiation 1.0 720 < th dose independent sin 14 NA