BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0465600 Os02g0465600|J100086M08
         (401 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0465600  Galactose oxidase, central domain containing p...   457   e-129
Os09g0292900  Galactose oxidase, central domain containing p...    83   3e-16
Os01g0704300  Conserved hypothetical protein                       77   2e-14

>Os02g0465600 Galactose oxidase, central domain containing protein
          Length = 401

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/370 (68%), Positives = 254/370 (68%)

Query: 1   MEAADAADSVLHGDLLECVLLRVPHGELTASPALVSXXXXXXXXXXXXXXXXXXXXLPCL 60
           MEAADAADSVLHGDLLECVLLRVPHGELTASPALVS                    LPCL
Sbjct: 1   MEAADAADSVLHGDLLECVLLRVPHGELTASPALVSREWRRAAREAHQRHRRRRRHLPCL 60

Query: 61  XXXXXXXXXXXXRSTHVYDPRAGAWASDGWRVAGALPVRRCACAGGDRVYALSLASMAVS 120
                       RSTHVYDPRAGAWASDGWRVAGALPVRRCACAGGDRVYALSLASMAVS
Sbjct: 61  VAHVHGAAAGVGRSTHVYDPRAGAWASDGWRVAGALPVRRCACAGGDRVYALSLASMAVS 120

Query: 121 EDAVGAAWRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEGAGWATCPP 180
           EDAVGAAWREL                                     LDEGAGWATCPP
Sbjct: 121 EDAVGAAWRELPPPRVWRVDPVVAAVGPHVVVLGGGCGATAAAGVVEVLDEGAGWATCPP 180

Query: 181 MPAPLASRWVSSAASERRVYVVERRTGWASWFDPAARQWGPARQLQLPEGNNTASVESWA 240
           MPAPLASRWVSSAASERRVYVVERRTGWASWFDPAARQWGPARQLQLPEGNNTASVESWA
Sbjct: 181 MPAPLASRWVSSAASERRVYVVERRTGWASWFDPAARQWGPARQLQLPEGNNTASVESWA 240

Query: 241 ACGVTTSGGGGASERXXXXXXXXXXXXXXXXXXXDTLLLDAEANNTSMPPEMSERLXXXX 300
           ACGVTTSGGGGASER                   DTLLLDAEANNTSMPPEMSERL    
Sbjct: 241 ACGVTTSGGGGASERLLVLAGGGGGKVSLWGVDGDTLLLDAEANNTSMPPEMSERLGGAG 300

Query: 301 XXXXXXXXXXXXYVYNASEPSKGAVRYELVDAEVXXXXXXXXXXXXKNGRHEKTWGKRSS 360
                       YVYNASEPSKGAVRYELVDAEV            KNGRHEKTWGKRSS
Sbjct: 301 SIAAAAAGAASGYVYNASEPSKGAVRYELVDAEVGGGHGSYSDSDSKNGRHEKTWGKRSS 360

Query: 361 GGSRWEWEWL 370
           GGSRWEWEWL
Sbjct: 361 GGSRWEWEWL 370



>Os09g0292900 Galactose oxidase, central domain containing protein
          Length = 394

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 117/292 (40%), Gaps = 53/292 (18%)

Query: 78  YDPRAGAWASDGWRVAGALPVRRCAC--------------AGGDRVYALSLASMAVSEDA 123
           YDPR+GAW +    V  A P R  A               A GDRV ALSL+ +AV+ DA
Sbjct: 66  YDPRSGAWLA----VPTAPPARHGATSPPQPHSHVRLMRGASGDRVCALSLSGLAVARDA 121

Query: 124 VG-------AAWRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEGAGWA 176
           +G        A +                                       + E  GW 
Sbjct: 122 LGMDDDALVVALKAPGVWRVDPVLAAVGDRVVAMGGACRLALGDGEDTSAVEVHERGGWT 181

Query: 177 TCPPMPAPL------ASRWVSSAASERRVYVVERRTGWASWFDPAARQWGPARQLQLPEG 230
            C  +P  L      A+ W+S+AA+++RVYV +R TG ASWFDPA +QWGP  +L+ P+ 
Sbjct: 182 HCGAVPTALRESAAAAATWLSTAATDQRVYVADRATGTASWFDPAKQQWGPTSRLR-PD- 239

Query: 231 NNTASVESWAACGVTTSGGGGASERXXXXXXXXXXXXXXXXXXXD----TLLLDAEANNT 286
              A+V +W       +G  GA +                    D    +L   A A + 
Sbjct: 240 ---ATVSTWG----LAAGRAGAEKIILFGVKHADSRVVIRSWEVDGDSLSLSHGAAAAHD 292

Query: 287 SMPPEMSERLX---------XXXXXXXXXXXXXXXYVYNASEPSKGAVRYEL 329
           +MP EMSERL                         YVYNA+ P+ GAV YEL
Sbjct: 293 TMPSEMSERLFPHGDDGEEETSSPSIGVCGNTAGGYVYNAAVPATGAVLYEL 344



>Os01g0704300 Conserved hypothetical protein
          Length = 216

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 79/174 (45%), Gaps = 31/174 (17%)

Query: 181 MPAPL----ASRWVSSAASERRVYVVERRTGWASWFDPAARQWGPARQLQLPEGNNTASV 236
           MPA L    A+ W+S AA+++RVY+ +R TGWASWFDPA +QWGP  +L+       A+V
Sbjct: 1   MPAELRESAAATWLSVAATDQRVYLTDRSTGWASWFDPAKQQWGPTCRLR-----PDATV 55

Query: 237 ESWAACGVTTSGGG-------GASERXXXXXXXXXXXXXXXXXXXDTLLLDAEANNTSMP 289
            +W   G+    GG       GA                      D L L   A + +MP
Sbjct: 56  STW---GLAPGRGGAERLVLFGAKRCGRAEQAKSRVVIQAWEVDGDGLALSRGAAHDTMP 112

Query: 290 PEMSERLX------------XXXXXXXXXXXXXXXYVYNASEPSKGAVRYELVD 331
            EMSERL                            YVYNA++P+ GAV YEL D
Sbjct: 113 GEMSERLFPRDEDGDEEDEEEMSPSIGVCGNAAGGYVYNAADPTIGAVLYELRD 166



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,883,599
Number of extensions: 364463
Number of successful extensions: 1280
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1273
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)