Os02g0465600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os02g0465600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 491.77 | 1.04 | 8.01 | 2.1 | 1.94 | -1.78 | -0.56 | -8.95 | 1.26 | 9.89 | 24.98 | 723 | 1.95 | -- |
| 526.93 | 1.07 | 7.94 | 3.64 | 1.74 | -2.32 | -0.987 | -- | 1.3 | 9.46 | 28.81 | 929 | 2.04 | -- |
| 492.81 | 1.03 | 8 | 2.18 | 1.95 | -1.84 | -- | -8.48 | 1.3 | 9.98 | 24.87 | 718 | 1.86 | -- |
| 511.94 | 1.05 | 7.8 | 3.89 | 1.93 | -2.73 | -- | -- | 1.78 | 10.4 | 24.74 | 708 | 1.67 | -- |
| 642.71 | 1.18 | 8.01 | 2.77 | -- | -2.66 | -- | -6.4 | 1.41 | -- | 25.48 | 924 | 0.000635 | -- |
| 697.27 | 1.24 | 7.87 | 3.19 | 2.32 | -- | -0.0411 | -- | 1.4 | 8.81 | -- | -- | -- | -- |
| 697.28 | 1.24 | 7.87 | 3.19 | 2.32 | -- | -- | -- | 1.4 | 8.81 | -- | -- | -- | -- |
| 652.3 | 1.19 | 7.9 | 3.88 | -- | -3.26 | -- | -- | 1.56 | -- | 26.85 | 910 | 9.86e-08 | -- |
| 856.53 | 1.36 | 8.01 | -- | 1.88 | -2.49 | -- | -- | 1.01 | 9.79 | 28.21 | 578 | 2.56 | -- |
| 1003.2 | 1.48 | 7.93 | 3.19 | -- | -- | -- | -- | 1.42 | -- | -- | -- | -- | -- |
| 965.46 | 1.45 | 7.95 | -- | 2.33 | -- | -- | -- | 1.05 | 8.71 | -- | -- | -- | -- |
| 1023.07 | 1.49 | 8.03 | -- | -- | -2.75 | -- | -- | 1 | -- | 28.01 | 852 | 8.74e-07 | -- |
| 1271.92 | 1.66 | 8.01 | -- | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 491.86 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 2 | 493.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 9 | 500.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 11 | 501.79 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 15 | 502.37 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 8 |
| 25 | 503.20 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 32 | 503.69 | temperature | 25 | 4320 | < th | dose independent | sin | 8 | NA |
| 40 | 504.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 12 |
| 84 | 507.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 87 | 507.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 6 |
| 99 | 507.91 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 10 |
| 127 | 508.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 130 | 508.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 143 | 508.52 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 147 | 508.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 151 | 508.75 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 285 | 509.35 | temperature | 30 | 720 | > th | dose dependent | sin | 22 | NA |
| 294 | 509.52 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 308 | 509.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 493 | 512.88 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 716 | 517.04 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 21 |
| 747 | 517.69 | temperature | 25 | 90 | > th | dose dependent | sin | 11 | NA |
| 748 | 517.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 838 | 518.52 | temperature | 25 | 10 | > th | dose dependent | sin | 11 | NA |
| 926 | 520.18 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 23 |
| 996 | 521.48 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |