BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0464400 Os02g0464400|J065026E08
         (37 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0464400  Similar to Arabinoxylan arabinofuranohydrolase...    76   6e-15
Os12g0128800  Similar to Arabinoxylan arabinofuranohydrolase...    63   4e-11

>Os02g0464400 Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II
          Length = 37

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1  YFRESSGSVIHPIMISSGYSDALAASAITWQDTQISF 37
          YFRESSGSVIHPIMISSGYSDALAASAITWQDTQISF
Sbjct: 1  YFRESSGSVIHPIMISSGYSDALAASAITWQDTQISF 37



>Os12g0128800 Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I
          Length = 571

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/37 (78%), Positives = 33/37 (89%)

Query: 1   YFRESSGSVIHPIMISSGYSDALAASAITWQDTQISF 37
           YFRESSG++IHPIMISS YSD LAASAITWQD + +F
Sbjct: 451 YFRESSGAMIHPIMISSSYSDLLAASAITWQDAENTF 487



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.127    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,037,216
Number of extensions: 16721
Number of successful extensions: 49
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 2
Length of query: 37
Length of database: 17,035,801
Length adjustment: 11
Effective length of query: 26
Effective length of database: 16,461,447
Effective search space: 427997622
Effective search space used: 427997622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)