BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0450000 Os02g0450000|AK122096
         (810 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0450000  Conserved hypothetical protein                     1077   0.0  
Os04g0261400  Cytochrome c region domain containing protein       829   0.0  

>Os02g0450000 Conserved hypothetical protein
          Length = 810

 Score = 1077 bits (2784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/627 (87%), Positives = 549/627 (87%)

Query: 184 MPPAYTAAEPVSHHHHLVVVDPSTVYXXXXXXXXXXXXXXXXXXXVLSGGKEDLGALAML 243
           MPPAYTAAEPVSHHHHLVVVDPSTVY                   VLSGGKEDLGALAML
Sbjct: 184 MPPAYTAAEPVSHHHHLVVVDPSTVYSPPLPALPPPPPQQPQSALVLSGGKEDLGALAML 243

Query: 244 EDSVKRLKSPKASPGAMLPKPQXXXXXXXXXEWFLESSGGVSLSAVANPKLRSFLRHVGL 303
           EDSVKRLKSPKASPGAMLPKPQ         EWFLESSGGVSLSAVANPKLRSFLRHVGL
Sbjct: 244 EDSVKRLKSPKASPGAMLPKPQADAALALLAEWFLESSGGVSLSAVANPKLRSFLRHVGL 303

Query: 304 PELQRTDLAGXXXXXXXXXXXXXXXXXXXXXLFFQLAADGWREQVVTLCVNLPNGTSVFH 363
           PELQRTDLAG                     LFFQLAADGWREQVVTLCVNLPNGTSVFH
Sbjct: 304 PELQRTDLAGARLDARFAEARADATARVRDALFFQLAADGWREQVVTLCVNLPNGTSVFH 363

Query: 364 RGVPVPAPAPSDYAEEXXXXXXXXXXXXXXXXXXHHCAGIVADRFKSKALRDLENKHHWM 423
           RGVPVPAPAPSDYAEE                  HHCAGIVADRFKSKALRDLENKHHWM
Sbjct: 364 RGVPVPAPAPSDYAEEVLLDAVASVSASGSSNDLHHCAGIVADRFKSKALRDLENKHHWM 423

Query: 424 VNLSCQIHGFTRLVRDFARELPLFRXXXXXXXXXXXYFNAKPTVRSLLHKHQIQELGHAS 483
           VNLSCQIHGFTRLVRDFARELPLFR           YFNAKPTVRSLLHKHQIQELGHAS
Sbjct: 424 VNLSCQIHGFTRLVRDFARELPLFRSAAAKSAKLAAYFNAKPTVRSLLHKHQIQELGHAS 483

Query: 484 LLRVAHVPFNSSGSDYRAAFEMLEDVLTSARPLQLAVLEESYKLVCIDDSAAREMADMLQ 543
           LLRVAHVPFNSSGSDYRAAFEMLEDVLTSARPLQLAVLEESYKLVCIDDSAAREMADMLQ
Sbjct: 484 LLRVAHVPFNSSGSDYRAAFEMLEDVLTSARPLQLAVLEESYKLVCIDDSAAREMADMLQ 543

Query: 544 DGSFWSEVEAVHLLVKLIMDMVKEMETDRPLVGQCLPLWEDLRGKVRDWCDKFNTDEGAA 603
           DGSFWSEVEAVHLLVKLIMDMVKEMETDRPLVGQCLPLWEDLRGKVRDWCDKFNTDEGAA
Sbjct: 544 DGSFWSEVEAVHLLVKLIMDMVKEMETDRPLVGQCLPLWEDLRGKVRDWCDKFNTDEGAA 603

Query: 604 LNVVEKRFRKNYHPAWSAAFILDPLYLIKDASGRYLPPFKFLTPDQEKDVDMLITRMVSR 663
           LNVVEKRFRKNYHPAWSAAFILDPLYLIKDASGRYLPPFKFLTPDQEKDVDMLITRMVSR
Sbjct: 604 LNVVEKRFRKNYHPAWSAAFILDPLYLIKDASGRYLPPFKFLTPDQEKDVDMLITRMVSR 663

Query: 664 EEAHIAVMELMKWRTEGLDPLYAQAVQVRQPDPSTGKMKVANKQSSRLVWETCLSELKSL 723
           EEAHIAVMELMKWRTEGLDPLYAQAVQVRQPDPSTGKMKVANKQSSRLVWETCLSELKSL
Sbjct: 664 EEAHIAVMELMKWRTEGLDPLYAQAVQVRQPDPSTGKMKVANKQSSRLVWETCLSELKSL 723

Query: 724 GKVAVRLIFLHATARGFRCSPSMLRWLSAPGSLAGGIDRAHRLVFVAANSKLERRDFSSD 783
           GKVAVRLIFLHATARGFRCSPSMLRWLSAPGSLAGGIDRAHRLVFVAANSKLERRDFSSD
Sbjct: 724 GKVAVRLIFLHATARGFRCSPSMLRWLSAPGSLAGGIDRAHRLVFVAANSKLERRDFSSD 783

Query: 784 EDKDAELLTEGDDDVLNEPGSLERSSV 810
           EDKDAELLTEGDDDVLNEPGSLERSSV
Sbjct: 784 EDKDAELLTEGDDDVLNEPGSLERSSV 810




 Score =  162 bits (411), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 29  QKRYEGLLTVRAKAVKGKGAWYWAHLEPVLIPAADTGMPPKAVKLRCGLCSAVFSASNPS 88
           QKRYEGLLTVRAKAVKGKGAWYWAHLEPVLIPAADTGMPPKAVKLRCGLCSAVFSASNPS
Sbjct: 29  QKRYEGLLTVRAKAVKGKGAWYWAHLEPVLIPAADTGMPPKAVKLRCGLCSAVFSASNPS 88

Query: 89  RTASEHLKRGTCPNF 103
           RTASEHLKRGTCPNF
Sbjct: 89  RTASEHLKRGTCPNF 103



>Os04g0261400 Cytochrome c region domain containing protein
          Length = 770

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/583 (71%), Positives = 459/583 (78%), Gaps = 9/583 (1%)

Query: 229 VLSGGKEDLGALAMLEDSVKRLKSPKASPGAMLPKPQXXXXXXXXXEWFLESSGGVSLSA 288
           VLSGG+ DLGALA LEDSVKRLKSP ASPGAMLP+ Q         EWFLESSG VSL++
Sbjct: 196 VLSGGRGDLGALARLEDSVKRLKSPVASPGAMLPRQQAEAALALLAEWFLESSGSVSLAS 255

Query: 289 VANPKLRSFLRHVGLPELQRTDLAGXXXXXXXXXXXXXXXXXXXXXLFFQLAADGWREQV 348
             +PKL++FLR VGLPEL R +LAG                      FFQLAADGWREQV
Sbjct: 256 AEHPKLKAFLRQVGLPELSRAELAGARLNARFAEARADAAARIREARFFQLAADGWREQV 315

Query: 349 VTLCVNLPNGTSVFHRGVPVPAPAPSDYAEEXXXXXXXXXXXXXXXXXXHHCAGIVADRF 408
           VTL VNLPNG SVF R VP PAPA SDYAE+                  HHCAGIVADRF
Sbjct: 316 VTLSVNLPNGASVFERAVPTPAPASSDYAEQLMLEAISSVSASSEL---HHCAGIVADRF 372

Query: 409 KSKALRDLENKHHWMVNLSCQIHGFTRLVRDFARELPLFRXXXXXXXXXXXYFNAKPTVR 468
            SKALRDLE+KH WM+NL+CQ+HG +RLVRD ARELPLF            YFNA PTVR
Sbjct: 373 GSKALRDLEHKHPWMLNLACQVHGLSRLVRDMARELPLFHSASANCAKMAAYFNAAPTVR 432

Query: 469 SLLHKHQIQELGHASLLRVAHVPFNSSGSDYRAAFEMLEDVLTSARPLQLAVLEESYKLV 528
           +LLHKHQ+QE GHA LLRVA  PF     D  AAF MLED+LTSARPLQLAV EESYKLV
Sbjct: 433 ALLHKHQVQEHGHAMLLRVAAPPF-----DRAAAFAMLEDILTSARPLQLAVHEESYKLV 487

Query: 529 CIDDSAAREMADMLQDGSFWSEVEAVHLLVKLIMDMVKEMETDRPLVGQCLPLWEDLRGK 588
           CIDD AARE+  M+Q  +FW+EVEA H LVKLI DMVKEME +RPLVGQCLPLWEDLRGK
Sbjct: 488 CIDDPAAREVGSMVQKVAFWTEVEAAHSLVKLITDMVKEMEAERPLVGQCLPLWEDLRGK 547

Query: 589 VRDWCDKFNTDEGAALNVVEKRFRKNYHPAWSAAFILDPLYLIKDASGRYLPPFKFLTPD 648
           VR WC KFN DEG A+NVVE RFRK+YHPAWSAAFILDPLYLIKD SGRYLPPFK+LTP+
Sbjct: 548 VRGWCRKFNVDEGIAMNVVEVRFRKSYHPAWSAAFILDPLYLIKDVSGRYLPPFKYLTPE 607

Query: 649 QEKDVDMLITRMVSREEAHIAVMELMKWRTEGLDPLYAQAVQVRQPDPSTGKMKVANKQS 708
           Q+KDVD LITR+VS EEAH+A+MELMKWR+EGLDPLYAQAVQVRQPDPSTGKM++ANKQS
Sbjct: 608 QDKDVDRLITRLVSPEEAHLALMELMKWRSEGLDPLYAQAVQVRQPDPSTGKMRIANKQS 667

Query: 709 SRLVWETCLSELKSLGKVAVRLIFLHATARGFRCSPSMLRWLSAPGSLAGGIDRAHRLVF 768
           SRLVWETCLS+LKSLGKVAVRLIFLHATA+GFRC+P M RWL+APGS A GI RA RLV+
Sbjct: 668 SRLVWETCLSDLKSLGKVAVRLIFLHATAKGFRCAPPMSRWLTAPGSSAAGIARAQRLVY 727

Query: 769 VAANSKLERRDFSSDEDKDAELLTEGDDDVLNEP-GSLERSSV 810
           VAANSKLERRDFS+D+DKD ELLTEGDDD+L E   S++ SSV
Sbjct: 728 VAANSKLERRDFSNDDDKDLELLTEGDDDMLTEATASVDPSSV 770




 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 66/75 (88%)

Query: 29  QKRYEGLLTVRAKAVKGKGAWYWAHLEPVLIPAADTGMPPKAVKLRCGLCSAVFSASNPS 88
           +KRY+ L+ VRAKAVKGKGAWYWAHLEPVL+P   +G+PPKA +LRC LC+A FSASNPS
Sbjct: 35  RKRYDALMQVRAKAVKGKGAWYWAHLEPVLVPPPGSGVPPKAARLRCVLCAATFSASNPS 94

Query: 89  RTASEHLKRGTCPNF 103
           RTASEHLKRG CPNF
Sbjct: 95  RTASEHLKRGACPNF 109



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,507,663
Number of extensions: 843910
Number of successful extensions: 2060
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2054
Number of HSP's successfully gapped: 4
Length of query: 810
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 701
Effective length of database: 11,344,475
Effective search space: 7952476975
Effective search space used: 7952476975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)