Os04g0261400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c region domain containing protein.
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Os04g0261400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.73 | 0.412 | 6.45 | -0.115 | 0.357 | 1.24 | -0.0164 | -0.701 | -0.183 | 12.2 | 25.7 | 167 | -- | -- |
| 77.43 | 0.41 | 6.46 | -0.219 | 0.377 | 1.26 | 0.122 | -- | -0.225 | 12.2 | 25.7 | 153 | -- | -- |
| 76.73 | 0.408 | 6.45 | -0.116 | 0.357 | 1.24 | -- | -0.694 | -0.183 | 12.2 | 25.7 | 167 | -- | -- |
| 77.47 | 0.41 | 6.46 | -0.224 | 0.358 | 1.28 | -- | -- | -0.206 | 12.3 | 25.7 | 166 | -- | -- |
| 82.05 | 0.422 | 6.46 | -0.127 | -- | 1.15 | -- | -0.708 | -0.199 | -- | 25.7 | 373 | -- | -- |
| 101.75 | 0.473 | 6.52 | -0.551 | 0.249 | -- | 0.000934 | -- | -0.479 | 9.34 | -- | -- | -- | -- |
| 101.75 | 0.472 | 6.52 | -0.551 | 0.249 | -- | -- | -- | -0.479 | 9.34 | -- | -- | -- | -- |
| 82.61 | 0.423 | 6.47 | -0.242 | -- | 1.21 | -- | -- | -0.232 | -- | 25.3 | 405 | -- | -- |
| 78.71 | 0.413 | 6.45 | -- | 0.344 | 1.36 | -- | -- | -0.164 | 12.4 | 25.67 | 196 | -- | -- |
| 105.36 | 0.48 | 6.53 | -0.552 | -- | -- | -- | -- | -0.478 | -- | -- | -- | -- | -- |
| 109.74 | 0.49 | 6.51 | -- | 0.249 | -- | -- | -- | -0.417 | 9.5 | -- | -- | -- | -- |
| 84.04 | 0.427 | 6.46 | -- | -- | 1.3 | -- | -- | -0.186 | -- | 25.25 | 408 | -- | -- |
| 113.39 | 0.497 | 6.51 | -- | -- | -- | -- | -- | -0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.68 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 3 | 76.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 6 | 76.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 8 | 77.11 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 21 | 77.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 29 | 78.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 30 | 78.05 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 33 | 78.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 54 | 78.35 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 87 | 78.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 119 | 78.95 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 182 | 79.47 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 186 | 79.49 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 212 | 79.55 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 221 | 79.57 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 260 | 79.64 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 23 | NA |
| 269 | 79.66 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 23 | NA |
| 336 | 79.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 427 | 79.85 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 8 | 19 |
| 498 | 79.91 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 568 | 79.95 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 608 | 79.97 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 617 | 79.98 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 632 | 79.98 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 4 |
| 677 | 80.01 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 785 | 80.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 845 | 80.15 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 858 | 80.16 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 865 | 80.16 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 12 | NA |
| 869 | 80.16 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 8 | 19 |
| 905 | 80.18 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 1 |