Os02g0450000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0450000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.51 | 0.58 | 6 | -0.0262 | 0.987 | -1.85 | -0.316 | -1.88 | -0.0529 | 20.6 | 0.5868 | 1438 | -- | -- |
| 154.07 | 0.578 | 6 | -0.168 | 0.96 | -1.41 | -0.333 | -- | -0.0462 | 20.7 | 0.7682 | 1433 | -- | -- |
| 152.77 | 0.576 | 6 | -0.000663 | 1.01 | -1.87 | -- | -2 | -0.052 | 20.7 | 0.5626 | 1442 | -- | -- |
| 153.51 | 0.577 | 6.03 | -0.129 | 0.999 | -1.35 | -- | -- | -0.0758 | 20.7 | 1.845 | 1438 | -- | -- |
| 160.54 | 0.59 | 5.96 | -0.141 | -- | -1.78 | -- | 0.815 | -0.0181 | -- | 0.5256 | 1068 | -- | -- |
| 175.89 | 0.622 | 5.99 | 0.153 | 0.985 | -- | -0.2 | -- | 0.102 | 20.7 | -- | -- | -- | -- |
| 176.02 | 0.621 | 5.99 | 0.159 | 0.984 | -- | -- | -- | 0.102 | 20.8 | -- | -- | -- | -- |
| 158.78 | 0.587 | 5.99 | -0.0222 | -- | -1.76 | -- | -- | -0.113 | -- | 1.713 | 2470 | -- | -- |
| 153.91 | 0.578 | 6.03 | -- | 0.996 | -1.31 | -- | -- | -0.0648 | 20.7 | 1.938 | 1438 | -- | -- |
| 230.95 | 0.71 | 5.96 | 0.158 | -- | -- | -- | -- | 0.094 | -- | -- | -- | -- | -- |
| 176.69 | 0.622 | 5.99 | -- | 0.984 | -- | -- | -- | 0.084 | 20.8 | -- | -- | -- | -- |
| 157.84 | 0.585 | 6.01 | -- | -- | -1.87 | -- | -- | -0.115 | -- | 2.345 | 2477 | -- | -- |
| 231.6 | 0.71 | 5.97 | -- | -- | -- | -- | -- | 0.0764 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 2 | 144.84 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 5 | 145.20 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 29 | 147.42 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 57 | 148.94 | radiation | 10 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 80 | 149.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 90 | 149.38 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 102 | 149.50 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 22 |
| 107 | 149.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 108 | 149.70 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 109 | 149.71 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 17 |
| 115 | 149.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 122 | 150.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 10 |
| 125 | 150.29 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 15 |
| 126 | 150.36 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 134 | 150.49 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 136 | 150.57 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 153 | 150.79 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 154 | 150.81 | radiation | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 160 | 150.85 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 19 |
| 166 | 150.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 168 | 150.93 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 13 |
| 170 | 150.95 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 187 | 150.96 | radiation | 10 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 200 | 151.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 17 |
| 223 | 151.30 | humidity | 80 | 720 | < th | dose independent | sin | 0 | NA |
| 227 | 151.32 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 16 |
| 228 | 151.34 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 230 | 151.35 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 234 | 151.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 237 | 151.38 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 238 | 151.39 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 242 | 151.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 243 | 151.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 252 | 151.44 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 266 | 151.49 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 270 | 151.53 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 10 |
| 282 | 151.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 283 | 151.64 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 287 | 151.69 | radiation | 10 | 1440 | < th | dose independent | rect. | 22 | 7 |
| 290 | 151.72 | radiation | 10 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 317 | 151.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 323 | 151.85 | humidity | 70 | 720 | > th | dose independent | rect. | 11 | 21 |
| 331 | 151.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 334 | 151.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 338 | 151.96 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 341 | 151.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 356 | 151.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 377 | 152.04 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 9 |
| 434 | 152.29 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 435 | 152.30 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 437 | 152.30 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 440 | 152.32 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 22 |
| 442 | 152.33 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |
| 506 | 152.66 | humidity | 80 | 720 | > th | dose independent | sin | 0 | NA |
| 508 | 152.66 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 532 | 152.72 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 552 | 152.77 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 9 |
| 559 | 152.80 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 16 |
| 570 | 152.85 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 571 | 152.85 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 582 | 152.89 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 606 | 152.94 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 610 | 152.97 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 645 | 153.02 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 658 | 153.03 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 664 | 153.04 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 668 | 153.04 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 14 |
| 688 | 153.08 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 696 | 153.10 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 698 | 153.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 706 | 153.11 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 707 | 153.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 708 | 153.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 709 | 153.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 790 | 153.18 | humidity | 70 | 720 | > th | dose independent | rect. | 11 | 13 |
| 792 | 153.18 | humidity | 70 | 720 | > th | dose independent | rect. | 11 | 15 |
| 801 | 153.20 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 21 |
| 876 | 153.32 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 879 | 153.33 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 19 |
| 880 | 153.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 927 | 153.40 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 933 | 153.42 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 961 | 153.49 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |