BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0324300 Os02g0324300|AK068494
(310 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0324300 Protein of unknown function DUF572 family protein 614 e-176
Os01g0588700 Protein of unknown function DUF572 family protein 79 3e-15
>Os02g0324300 Protein of unknown function DUF572 family protein
Length = 310
Score = 614 bits (1583), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/310 (96%), Positives = 299/310 (96%)
Query: 1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGG 60
MSSLAAARADNFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGG
Sbjct: 1 MSSLAAARADNFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGG 60
Query: 61 CNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGAQRK 120
CNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGAQRK
Sbjct: 61 CNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGAQRK 120
Query: 121 TEDYDVEDAETLLLPADEERDKLADPMYKLEHQEEDLKKKKEAEPVLVRLQRLSDSRHSD 180
TEDYDVEDAETLLLPADEERDKLADPMYKLEHQEEDLKKKKEAEPVLVRLQRLSDSRHSD
Sbjct: 121 TEDYDVEDAETLLLPADEERDKLADPMYKLEHQEEDLKKKKEAEPVLVRLQRLSDSRHSD 180
Query: 181 DYALNRALRDRLRSQKKRVAEEKRSARKMGLGVRLLPPSAEDATAAASVKFASKFEKSRR 240
DYALNRALRDRLRSQKKRVAEEKRSARKMGLGVRLLPPSAEDATAAASVKFASKFEKSRR
Sbjct: 181 DYALNRALRDRLRSQKKRVAEEKRSARKMGLGVRLLPPSAEDATAAASVKFASKFEKSRR 240
Query: 241 DKRAAIKAASIFPESSSSTSKNKLDLALKRRNIKAGAASALMASRVKPXXXXXXXXXXXR 300
DKRAAIKAASIFPESSSSTSKNKLDLALKRRNIKAGAASALMASRVKP R
Sbjct: 241 DKRAAIKAASIFPESSSSTSKNKLDLALKRRNIKAGAASALMASRVKPSSWQSAGSGSSR 300
Query: 301 TQMPIMATRK 310
TQMPIMATRK
Sbjct: 301 TQMPIMATRK 310
>Os01g0588700 Protein of unknown function DUF572 family protein
Length = 330
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 15/171 (8%)
Query: 11 NFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVR 70
N YYPP++ P K R R K Q + +R +P +I CG C + I KG +
Sbjct: 8 NKYYPPDFDPSK----------IPRRRQPKNQQ--IKVRMMLPMSIRCGTCGTYIYKGTK 55
Query: 71 FNAEKKQVGN--YYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGAQRKTEDYDVED 128
FN+ K+ V Y +I+ F K C EI +TDP+N++Y + SGA R E + ED
Sbjct: 56 FNSRKEDVEGEKYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNFEPWREED 115
Query: 129 AETLLLPADEERDKLADPMYKLEHQEEDLKKKKEAEPVLVRLQRLSDSRHS 179
+ +++ D M LE++ D K+ + L ++ + SRH+
Sbjct: 116 EVADREKRKRDEEEMGDAMRALENRAMDSKQDMDILAALEEMRSMK-SRHA 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,440,228
Number of extensions: 373080
Number of successful extensions: 1454
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1452
Number of HSP's successfully gapped: 3
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)