BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0324200 Os02g0324200|AK070063
         (48 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0324200  Conserved hypothetical protein                      102   8e-23
Os10g0167700  Conserved hypothetical protein                       94   2e-20

>Os02g0324200 Conserved hypothetical protein
          Length = 48

 Score =  102 bits (253), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 1  MRWGGRLEEGGDNLDDGCPHQRWSGSRVATGQYSNIGTKDYTSKLSVC 48
          MRWGGRLEEGGDNLDDGCPHQRWSGSRVATGQYSNIGTKDYTSKLSVC
Sbjct: 1  MRWGGRLEEGGDNLDDGCPHQRWSGSRVATGQYSNIGTKDYTSKLSVC 48



>Os10g0167700 Conserved hypothetical protein
          Length = 48

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 46/47 (97%)

Query: 1  MRWGGRLEEGGDNLDDGCPHQRWSGSRVATGQYSNIGTKDYTSKLSV 47
          MRWGGRLEEGGDNLDDGC HQRWSGSRVATGQYS+IGTKDYTSKLSV
Sbjct: 1  MRWGGRLEEGGDNLDDGCTHQRWSGSRVATGQYSDIGTKDYTSKLSV 47



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.135    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,101,597
Number of extensions: 67741
Number of successful extensions: 79
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 48
Length of database: 17,035,801
Length adjustment: 21
Effective length of query: 27
Effective length of database: 15,939,307
Effective search space: 430361289
Effective search space used: 430361289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)