BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0316900 Os02g0316900|AK065679
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0316900 Conserved hypothetical protein 441 e-124
Os02g0633100 Conserved hypothetical protein 307 4e-84
>Os02g0316900 Conserved hypothetical protein
Length = 212
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 HYDKNLDQSCLLFSITAAIKKMPLELFLQVVGSAKVHTLIKKCSLGKTLSEIPTDIYNQL 60
HYDKNLDQSCLLFSITAAIKKMPLELFLQVVGSAKVHTLIKKCSLGKTLSEIPTDIYNQL
Sbjct: 1 HYDKNLDQSCLLFSITAAIKKMPLELFLQVVGSAKVHTLIKKCSLGKTLSEIPTDIYNQL 60
Query: 61 MDTHAKGRLSRLINILDKLKLIGLLNGYIEDSNVQPDDLPTHSLELRPYIEEPTPRIILS 120
MDTHAKGRLSRLINILDKLKLIGLLNGYIEDSNVQPDDLPTHSLELRPYIEEPTPRIILS
Sbjct: 61 MDTHAKGRLSRLINILDKLKLIGLLNGYIEDSNVQPDDLPTHSLELRPYIEEPTPRIILS 120
Query: 121 SHVNGNHCPKFRHDFQLSKLESVDTYWETLKYSYVTAGLAETSAFPGCCIPEVSHPRSWS 180
SHVNGNHCPKFRHDFQLSKLESVDTYWETLKYSYVTAGLAETSAFPGCCIPEVSHPRSWS
Sbjct: 121 SHVNGNHCPKFRHDFQLSKLESVDTYWETLKYSYVTAGLAETSAFPGCCIPEVSHPRSWS 180
Query: 181 SVRVMTTDQHLELQQRLMNESETKFATRLQRS 212
SVRVMTTDQHLELQQRLMNESETKFATRLQRS
Sbjct: 181 SVRVMTTDQHLELQQRLMNESETKFATRLQRS 212
>Os02g0633100 Conserved hypothetical protein
Length = 1820
Score = 307 bits (786), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 150/205 (73%), Positives = 170/205 (82%), Gaps = 2/205 (0%)
Query: 1 HYDKNLDQSCLLFSITAAIKKMPLELFLQVVGSAK-VHTLIKKCSLGKTLSEIPTDIYNQ 59
H+DKNL QS +LFS+ A KKMPLELFLQVVGSAK + +I KC LGKTLSEIPT+ YNQ
Sbjct: 680 HHDKNLSQSSVLFSMVGATKKMPLELFLQVVGSAKKIDHMITKCRLGKTLSEIPTEEYNQ 739
Query: 60 LMDTHAKGRLSRLINILDKLKLIGLLNGYIEDSNVQPDDLPTHSLELRPYIEEPTPRIIL 119
LMDTHAKGRLSRL+NILDKLKL+ L ++DS D LPTHS+ELRPYIEEPTPRI+
Sbjct: 740 LMDTHAKGRLSRLVNILDKLKLVQLAKELVDDSGAPSDALPTHSIELRPYIEEPTPRILP 799
Query: 120 SSHVNGNHCPKFRHDFQLSKLESVDTYWETLKYSYVTAGLAE-TSAFPGCCIPEVSHPRS 178
SSHVN NH PK RHDF LS+ E VD YWETL+Y Y+TAGLAE +SAFPGC +PEVSHPRS
Sbjct: 800 SSHVNVNHRPKIRHDFVLSRQEFVDAYWETLEYCYLTAGLAEPSSAFPGCSVPEVSHPRS 859
Query: 179 WSSVRVMTTDQHLELQQRLMNESET 203
WSS+RVMTT+Q LELQQR+MN SE
Sbjct: 860 WSSLRVMTTEQRLELQQRIMNASEN 884
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,927,838
Number of extensions: 274026
Number of successful extensions: 612
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)