BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0299600 Os02g0299600|AK069297
         (70 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0299600  Protein of unknown function DUF1242 family pro...   141   9e-35
Os05g0251500  Similar to Similarities with spP29295 Saccharo...   117   1e-27

>Os02g0299600 Protein of unknown function DUF1242 family protein
          Length = 70

 Score =  141 bits (356), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MSALFNFHSFVTVVLLLICTCTFLKMHFPSILVRRTGFRGFFWKAARIGERLSPWVAIGC 60
          MSALFNFHSFVTVVLLLICTCTFLKMHFPSILVRRTGFRGFFWKAARIGERLSPWVAIGC
Sbjct: 1  MSALFNFHSFVTVVLLLICTCTFLKMHFPSILVRRTGFRGFFWKAARIGERLSPWVAIGC 60

Query: 61 SVMGISIIFY 70
          SVMGISIIFY
Sbjct: 61 SVMGISIIFY 70



>Os05g0251500 Similar to Similarities with spP29295 Saccharomyces cerevisiae
          YPL204w HRR25 casein kinase I
          Length = 70

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 64/70 (91%)

Query: 1  MSALFNFHSFVTVVLLLICTCTFLKMHFPSILVRRTGFRGFFWKAARIGERLSPWVAIGC 60
          MSALFNF+SF+TVVLL+ICTCT++K+ FP+IL  RTGFRGFFWKAARIGERLSPWVA+GC
Sbjct: 1  MSALFNFNSFLTVVLLVICTCTYIKIQFPAILNDRTGFRGFFWKAARIGERLSPWVALGC 60

Query: 61 SVMGISIIFY 70
            MGIS IF+
Sbjct: 61 FAMGISTIFF 70



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.340    0.147    0.504 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,088,803
Number of extensions: 60083
Number of successful extensions: 216
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 2
Length of query: 70
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 28
Effective length of database: 14,842,813
Effective search space: 415598764
Effective search space used: 415598764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 149 (62.0 bits)