BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0294700 Os02g0294700|AK069078
(657 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0294700 Conserved hypothetical protein 1220 0.0
Os02g0295700 Conserved hypothetical protein 1173 0.0
Os02g0517300 Conserved hypothetical protein 491 e-139
Os01g0769000 Conserved hypothetical protein 484 e-137
AK070157 484 e-137
>Os02g0294700 Conserved hypothetical protein
Length = 657
Score = 1220 bits (3156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/657 (92%), Positives = 605/657 (92%)
Query: 1 MPSLLHRTSSYPQQEPQYSHTEPIPVPKSSFIPYPPSGAVSHSSPGQPHNMNMPSPPTSF 60
MPSLLHRTSSYPQQEPQYSHTEPIPVPKSSFIPYPPSGAVSHSSPGQPHNMNMPSPPTSF
Sbjct: 1 MPSLLHRTSSYPQQEPQYSHTEPIPVPKSSFIPYPPSGAVSHSSPGQPHNMNMPSPPTSF 60
Query: 61 QMPVSAQNELHHPQFXXXXXXXXXXXXSMAHLDSAGLSTNNLQQNALNSGPVRPNGAMLT 120
QMPVSAQNELHHPQF SMAHLDSAGLSTNNLQQNALNSGPVRPNGAMLT
Sbjct: 61 QMPVSAQNELHHPQFPRGGMPPGPLGRSMAHLDSAGLSTNNLQQNALNSGPVRPNGAMLT 120
Query: 121 PGLVQHNLQRPNGLVPPQMLSRHPQHGMAPIQHSPPQFSQFHAQMLGPRHPPPKGCQMYN 180
PGLVQHNLQRPNGLVPPQMLSRHPQHGMAPIQHSPPQFSQFHAQMLGPRHPPPKGCQMYN
Sbjct: 121 PGLVQHNLQRPNGLVPPQMLSRHPQHGMAPIQHSPPQFSQFHAQMLGPRHPPPKGCQMYN 180
Query: 181 PQRPSQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELAGMRMDNGWPRFRSK 240
PQRPSQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELAGMRMDNGWPRFRSK
Sbjct: 181 PQRPSQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELAGMRMDNGWPRFRSK 240
Query: 241 YMSTPEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSSRAR 300
YMSTPEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSSRAR
Sbjct: 241 YMSTPEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSSRAR 300
Query: 301 SKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQEPMLAARI 360
SKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQEPMLAARI
Sbjct: 301 SKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQEPMLAARI 360
Query: 361 TIEXXXXXXXXXXXXXXXXQFSQQQDGGLQLRNRRXXXXXXXXXXXXXVDPLTPSNNAPL 420
TIE QFSQQQDGGLQLRNRR VDPLTPSNNAPL
Sbjct: 361 TIEDGLCLLLDVDDIDRLLQFSQQQDGGLQLRNRRQALLEQLAESLQLVDPLTPSNNAPL 420
Query: 421 SPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPSDSSAV 480
SPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPSDSSAV
Sbjct: 421 SPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPSDSSAV 480
Query: 481 ETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKSVLDTA 540
ETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKSVLDTA
Sbjct: 481 ETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKSVLDTA 540
Query: 541 TELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAAVIGRE 600
TELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAAVIGRE
Sbjct: 541 TELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAAVIGRE 600
Query: 601 MPVELLRASLPHTNEYQRKQLLGFAQRTVPVXXXXXXXXXXXPMTSESIPSSESWKI 657
MPVELLRASLPHTNEYQRKQLLGFAQRTVPV PMTSESIPSSESWKI
Sbjct: 601 MPVELLRASLPHTNEYQRKQLLGFAQRTVPVNNHSSHGSSNGPMTSESIPSSESWKI 657
>Os02g0295700 Conserved hypothetical protein
Length = 830
Score = 1173 bits (3034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/657 (89%), Positives = 591/657 (89%)
Query: 1 MPSLLHRTSSYPQQEPQYSHTEPIPVPKSSFIPYPPSGAVSHSSPGQPHNMNMPSPPTSF 60
MP LLHRTSSYPQQEPQY+HTEPIPVPKSSFI YPPSGAVSHSSPGQPH+MNMPSPPTSF
Sbjct: 174 MPYLLHRTSSYPQQEPQYNHTEPIPVPKSSFISYPPSGAVSHSSPGQPHHMNMPSPPTSF 233
Query: 61 QMPVSAQNELHHPQFXXXXXXXXXXXXSMAHLDSAGLSTNNLQQNALNSGPVRPNGAMLT 120
QMPVSAQNELHHPQF +MAHLDSAGLSTNNLQQNALNSGP+RPNGAMLT
Sbjct: 234 QMPVSAQNELHHPQFPRGGMPPGPLGRNMAHLDSAGLSTNNLQQNALNSGPIRPNGAMLT 293
Query: 121 PGLVQHNLQRPNGLVPPQMLSRHPQHGMAPIQHSPPQFSQFHAQMLGPRHPPPKGCQMYN 180
PGLVQHNLQRPNGLVPPQMLSR PQHGMAPIQHSPPQFSQFHAQMLGPRHPPP+G QMYN
Sbjct: 294 PGLVQHNLQRPNGLVPPQMLSRRPQHGMAPIQHSPPQFSQFHAQMLGPRHPPPQGRQMYN 353
Query: 181 PQRPSQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELAGMRMDNGWPRFRSK 240
PQ SQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELA MRMDNGWPRFRSK
Sbjct: 354 PQHSSQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELASMRMDNGWPRFRSK 413
Query: 241 YMSTPEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSSRAR 300
YMST EIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSS AR
Sbjct: 414 YMSTAEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSSCAR 473
Query: 301 SKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQEPMLAARI 360
SKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQEPMLAARI
Sbjct: 474 SKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQEPMLAARI 533
Query: 361 TIEXXXXXXXXXXXXXXXXQFSQQQDGGLQLRNRRXXXXXXXXXXXXXVDPLTPSNNAPL 420
TIE QFSQQQDGGLQLRNRR VDPLTPSNN PL
Sbjct: 534 TIEDGLCLLLDVDDIDRLLQFSQQQDGGLQLRNRRQALLEQLAESLQLVDPLTPSNNGPL 593
Query: 421 SPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPSDSSAV 480
SPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPSDSSAV
Sbjct: 594 SPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPSDSSAV 653
Query: 481 ETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKSVLDTA 540
ETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKSVLD A
Sbjct: 654 ETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKSVLDRA 713
Query: 541 TELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAAVIGRE 600
TELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAAVI RE
Sbjct: 714 TELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAAVISRE 773
Query: 601 MPVELLRASLPHTNEYQRKQLLGFAQRTVPVXXXXXXXXXXXPMTSESIPSSESWKI 657
MPVELLRASLPHTNEYQRKQLL F+QRTVPV PMTSESIPSSES KI
Sbjct: 774 MPVELLRASLPHTNEYQRKQLLSFSQRTVPVNNHSSHGSNNGPMTSESIPSSESRKI 830
>Os02g0517300 Conserved hypothetical protein
Length = 815
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 304/662 (45%), Positives = 392/662 (59%), Gaps = 33/662 (4%)
Query: 5 LHRTSSYPQQEPQYSHTEPIPVPKS-SFIPYPPSGAVS-HSSPGQPHNMNMPSPPTSFQM 62
L RTSSYPQQ Q+ +EPI PKS SF +PP G S ++S G + ++PS QM
Sbjct: 170 LSRTSSYPQQPLQHRASEPIIPPKSPSFTSFPPPGGRSPYTSQGLTRHGSIPSLGAGLQM 229
Query: 63 PVSAQNELHHPQFXXXXXXXXXXXXSMAHLDSAGLSTNNLQQNALNSGPVRPNGAM--LT 120
+ + P SM+ ++ L NN QN S G L
Sbjct: 230 GSPSMSLPSSPYHIAGLSHGLPYGGSMS-FGTSNLPVNNPMQNDWPSQANLYAGEQFNLL 288
Query: 121 PGLVQHNLQRPNGLVPPQMLSRHPQHGMAPIQHSPPQFSQFHAQMLGPRHPPPKGCQMYN 180
P ++Q + PN + + S+ Q H L PP Q ++
Sbjct: 289 PNMLQKQISLPNSPMSSLLFSQQQQRLAQVQVQPS------HQNYL--NLPPHIFYQHHS 340
Query: 181 PQRPSQMMSGFDANLAMPDLSDPRARAML-HHGVHGQHYLPQGFELAGMRMDNGWPRFRS 239
P+ + FD+ ++P D R+R+ H + LP + D+G +FRS
Sbjct: 341 PE----LTGRFDSVSSVPSSRDKRSRSGRGKHNIRFSQPLP---DTGNQNGDSGGIKFRS 393
Query: 240 KYMSTPEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSSRA 299
KYMS+ EIE+I RMQ +A+ +DPY+ DYYHQAC+AK+ A + K +F PT ++D S++
Sbjct: 394 KYMSSEEIESILRMQHSASHSSDPYVVDYYHQACIAKRGANSRPKANFAPTSMKDLPSKS 453
Query: 300 RSKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQEPMLAAR 359
RS + HAYLQVDA+GR+ FSSIRRPR LL+V+ S S +KS+ + L++EPMLAAR
Sbjct: 454 RSSGDHHAYLQVDAVGRVSFSSIRRPRSLLEVDLPSSSDGSHDQKSSLRPLEKEPMLAAR 513
Query: 360 ITIEXXXXXXXXXXXXXXXXQFSQQQDGGLQLRNRRXXXXXXXXXXXXXVDPLTPS---N 416
+T+E Q SQ QD QLR RR VDPL PS +
Sbjct: 514 VTVEDALCLLLEVDDIDRLLQSSQAQDNSFQLRRRRQVLLEGLAASLQLVDPLGPSTSSH 573
Query: 417 NAPLSPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPSD 476
++ L+ DDLVFLRIVSLPKGRK LSRYL L++ GSEL RI CMA+FRHLR++FG LPSD
Sbjct: 574 SSGLAAKDDLVFLRIVSLPKGRKFLSRYLRLLTPGSELTRIVCMAIFRHLRYLFGGLPSD 633
Query: 477 SSAVETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKSV 536
SSA ETT LA +S+CV +EL LSACLAA+VCS QPPLRPL +AGDGAS IIKSV
Sbjct: 634 SSAAETTVTLAKTLSSCVRHMELGALSACLAAVVCSPEQPPLRPLASSAGDGASLIIKSV 693
Query: 537 LDTATELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAAV 596
LD ATELLTDQH A++Y++ NR LWQASFDAFFGLLT+YC+SK++S I + T + +V
Sbjct: 694 LDRATELLTDQHAAASYTVSNRTLWQASFDAFFGLLTKYCLSKYES-IRQMFTMQSPGSV 752
Query: 597 IG--------REMPVELLRASLPHTNEYQRKQLLGFAQRTVPVXXXXXXXXXXXPMTSES 648
IG REMPVELLRASLPHTN+ QR+ LL FAQRT+PV +TSES
Sbjct: 753 IGSEVSKATSREMPVELLRASLPHTNDQQRQLLLDFAQRTMPVTGFNASGANGGHITSES 812
Query: 649 IP 650
+P
Sbjct: 813 VP 814
>Os01g0769000 Conserved hypothetical protein
Length = 809
Score = 484 bits (1247), Expect = e-137, Method: Compositional matrix adjust.
Identities = 299/668 (44%), Positives = 382/668 (57%), Gaps = 45/668 (6%)
Query: 5 LHRTSSYPQQEPQYSHTEPIPVPKSSFI----------PYPPSGAVSHSSPGQPHNMNMP 54
L RTSSYPQQ Q+ +EPI P+S PY G H S +P
Sbjct: 164 LSRTSSYPQQPLQHRASEPIIAPQSPPFTSFPPPGARSPYTAQGLTRHGS--------IP 215
Query: 55 SPPTSFQMPVSAQNELHHPQFXXXXXXXXXXXXSMAHLDSAGLSTNNLQQNAL--NSGPV 112
S QM + + S++ S L +N QN + P
Sbjct: 216 SVGAGLQMGSPSMSLPSSSYHMAGLSHGLPYGGSVS-FGSPNLPGSNPIQNDWPNQANPY 274
Query: 113 RPNGAMLTPGLVQHNLQRPNGLVPPQMLSRHPQHGMAPIQHSPPQFSQFHAQMLGPRHPP 172
+ L P ++Q + PN + + S+ Q H L PP
Sbjct: 275 AVDQFNLLPNMLQKQISLPNSPMSSLLFSQQQQRLAQVQVQPS------HQNYL--NLPP 326
Query: 173 PKGCQMYNPQRPSQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELAGMRMDN 232
Q ++P+ + FD+ +P L D R+R+ G H + + D+
Sbjct: 327 HLFYQHHSPE----LTGRFDSISNVPSLRDKRSRS--GRGKHSTRFSQPLTDTGSQNGDS 380
Query: 233 GWPRFRSKYMSTPEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLI 292
G +FRSKYMS+ EIE+I RMQ +A+ +DPY+ DYYHQAC+AKK A + K +F PT +
Sbjct: 381 GGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQACIAKKGASSRQKANFAPTSM 440
Query: 293 RDPSSRARSKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQ 352
+D S++RS + HAYLQVDALGR+ FSSIRRPR LL+V+ S +KS+ + L++
Sbjct: 441 KDLPSKSRSSSDHHAYLQVDALGRVSFSSIRRPRSLLEVDLPSSGDGSHDQKSSLRPLEK 500
Query: 353 EPMLAARITIEXXXXXXXXXXXXXXXXQFSQQQDGGLQLRNRRXXXXXXXXXXXXXVDPL 412
EPMLAAR+T+E Q SQ QD QLR RR VDPL
Sbjct: 501 EPMLAARVTVEDAICLLLEVDDIDRLLQSSQAQDNSFQLRRRRQVLLEGLATSLQLVDPL 560
Query: 413 TPSNNA---PLSPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFI 469
PS ++ L+P DDLVFLRIVSLPKGRKLLSRYL L++ GSEL RI CMA+FRHLR++
Sbjct: 561 GPSKSSHSSGLAPKDDLVFLRIVSLPKGRKLLSRYLRLLTPGSELTRIICMAIFRHLRYL 620
Query: 470 FGNLPSDSSAVETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGA 529
FG LPSDSSA ETT LA VS+CV+ +EL LSACLAA+VCSS QPPLRPL +AGDGA
Sbjct: 621 FGGLPSDSSAAETTVALAKTVSSCVLHMELGALSACLAAVVCSSEQPPLRPLASSAGDGA 680
Query: 530 SFIIKSVLDTATELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSV--IHAL 587
S IIKSVLD ATELLTD H A++Y++ NR LWQASFDAFFGLLT+YC+SK++S+ + +
Sbjct: 681 SLIIKSVLDRATELLTDHHAAASYTVSNRTLWQASFDAFFGLLTKYCLSKYESIKQMFVM 740
Query: 588 Q-----TQPAVAAVIGREMPVELLRASLPHTNEYQRKQLLGFAQRTVPVXXXXXXXXXXX 642
Q T V+ REMPVELLRASLPHTN+ QR+ LL FAQRT+PV
Sbjct: 741 QSPCSVTGSEVSKATSREMPVELLRASLPHTNDQQRQLLLDFAQRTMPVTGINPTGANGG 800
Query: 643 PMTSESIP 650
+TSES+P
Sbjct: 801 YITSESVP 808
>AK070157
Length = 809
Score = 484 bits (1247), Expect = e-137, Method: Compositional matrix adjust.
Identities = 299/668 (44%), Positives = 382/668 (57%), Gaps = 45/668 (6%)
Query: 5 LHRTSSYPQQEPQYSHTEPIPVPKSSFI----------PYPPSGAVSHSSPGQPHNMNMP 54
L RTSSYPQQ Q+ +EPI P+S PY G H S +P
Sbjct: 164 LSRTSSYPQQPLQHRASEPIIAPQSPPFTSFPPPGARSPYTAQGLTRHGS--------IP 215
Query: 55 SPPTSFQMPVSAQNELHHPQFXXXXXXXXXXXXSMAHLDSAGLSTNNLQQNAL--NSGPV 112
S QM + + S++ S L +N QN + P
Sbjct: 216 SVGAGLQMGSPSMSLPSSSYHMAGLSHGLPYGGSVS-FGSPNLPGSNPIQNDWPNQANPY 274
Query: 113 RPNGAMLTPGLVQHNLQRPNGLVPPQMLSRHPQHGMAPIQHSPPQFSQFHAQMLGPRHPP 172
+ L P ++Q + PN + + S+ Q H L PP
Sbjct: 275 AVDQFNLLPNMLQKQISLPNSPMSSLLFSQQQQRLAQVQVQPS------HQNYL--NLPP 326
Query: 173 PKGCQMYNPQRPSQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELAGMRMDN 232
Q ++P+ + FD+ +P L D R+R+ G H + + D+
Sbjct: 327 HLFYQHHSPE----LTGRFDSISNVPSLRDKRSRS--GRGKHSTRFSQPLTDTGSQNGDS 380
Query: 233 GWPRFRSKYMSTPEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLI 292
G +FRSKYMS+ EIE+I RMQ +A+ +DPY+ DYYHQAC+AKK A + K +F PT +
Sbjct: 381 GGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQACIAKKGASSRQKANFAPTSM 440
Query: 293 RDPSSRARSKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQ 352
+D S++RS + HAYLQVDALGR+ FSSIRRPR LL+V+ S +KS+ + L++
Sbjct: 441 KDLPSKSRSSSDHHAYLQVDALGRVSFSSIRRPRSLLEVDLPSSGDGSHDQKSSLRPLEK 500
Query: 353 EPMLAARITIEXXXXXXXXXXXXXXXXQFSQQQDGGLQLRNRRXXXXXXXXXXXXXVDPL 412
EPMLAAR+T+E Q SQ QD QLR RR VDPL
Sbjct: 501 EPMLAARVTVEDAICLLLEVDDIDRLLQSSQAQDNSFQLRRRRQVLLEGLATSLQLVDPL 560
Query: 413 TPSNNA---PLSPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFI 469
PS ++ L+P DDLVFLRIVSLPKGRKLLSRYL L++ GSEL RI CMA+FRHLR++
Sbjct: 561 GPSKSSHSSGLAPKDDLVFLRIVSLPKGRKLLSRYLRLLTPGSELTRIICMAIFRHLRYL 620
Query: 470 FGNLPSDSSAVETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGA 529
FG LPSDSSA ETT LA VS+CV+ +EL LSACLAA+VCSS QPPLRPL +AGDGA
Sbjct: 621 FGGLPSDSSAAETTVALAKTVSSCVLHMELGALSACLAAVVCSSEQPPLRPLASSAGDGA 680
Query: 530 SFIIKSVLDTATELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSV--IHAL 587
S IIKSVLD ATELLTD H A++Y++ NR LWQASFDAFFGLLT+YC+SK++S+ + +
Sbjct: 681 SLIIKSVLDRATELLTDHHAAASYTVSNRTLWQASFDAFFGLLTKYCLSKYESIKQMFVM 740
Query: 588 Q-----TQPAVAAVIGREMPVELLRASLPHTNEYQRKQLLGFAQRTVPVXXXXXXXXXXX 642
Q T V+ REMPVELLRASLPHTN+ QR+ LL FAQRT+PV
Sbjct: 741 QSPCSVTGSEVSKATSREMPVELLRASLPHTNDQQRQLLLDFAQRTMPVTGINPTGANGG 800
Query: 643 PMTSESIP 650
+TSES+P
Sbjct: 801 YITSESVP 808
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,755,143
Number of extensions: 991608
Number of successful extensions: 3862
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3845
Number of HSP's successfully gapped: 5
Length of query: 657
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 550
Effective length of database: 11,448,903
Effective search space: 6296896650
Effective search space used: 6296896650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)