Os02g0294700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0294700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.79 | 0.198 | 10.2 | 1.41 | 0.218 | -0.323 | -0.249 | 2.03 | 0.31 | 2.2 | 20.8 | 1769 | -- | -- |
| 20.16 | 0.209 | 10.3 | 1.04 | 0.238 | -0.368 | -0.289 | -- | 0.205 | 2.56 | 14.55 | 19494 | -- | -- |
| 18.02 | 0.198 | 10.2 | 1.42 | 0.217 | -0.325 | -- | 2.03 | 0.311 | 2.12 | 20.86 | 1761 | -- | -- |
| 20.17 | 0.209 | 10.3 | 1.05 | 0.231 | -0.397 | -- | -- | 0.249 | 2.4 | 10.4 | 19516 | -- | -- |
| 20.29 | 0.211 | 10.3 | 1.1 | -- | -0.436 | -- | 1.6 | 0.239 | -- | 21.07 | 1743 | -- | -- |
| 22.26 | 0.221 | 10.3 | 0.747 | 0.227 | -- | -0.281 | -- | 0.0981 | 2.69 | -- | -- | -- | -- |
| 22.54 | 0.222 | 10.3 | 0.754 | 0.225 | -- | -- | -- | 0.0999 | 2.56 | -- | -- | -- | -- |
| 22.62 | 0.222 | 10.3 | 0.845 | -- | -0.448 | -- | -- | 0.165 | -- | 10.4 | 19516 | -- | -- |
| 29.29 | 0.252 | 10.3 | -- | 0.199 | 0.407 | -- | -- | -0.12 | 3.36 | 18.37 | 47520 | -- | -- |
| 25.51 | 0.236 | 10.3 | 0.763 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 37.51 | 0.286 | 10.3 | -- | 0.24 | -- | -- | -- | 0.0159 | 2.6 | -- | -- | -- | -- |
| 31.9 | 0.263 | 10.4 | -- | -- | 0.445 | -- | -- | -0.141 | -- | 19.9 | 47520 | -- | -- |
| 40.88 | 0.298 | 10.3 | -- | -- | -- | -- | -- | 0.0208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 2 | 16.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 3 | 16.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 47 | 16.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 50 | 16.74 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 54 | 16.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 61 | 16.76 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 70 | 16.78 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 93 | 16.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 119 | 16.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 128 | 16.97 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 134 | 16.99 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 136 | 16.99 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 154 | 17.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 173 | 17.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 189 | 17.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 238 | 17.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 267 | 17.25 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 282 | 17.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 297 | 17.31 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 306 | 17.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 308 | 17.32 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 386 | 17.39 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 398 | 17.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 407 | 17.41 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 408 | 17.41 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 413 | 17.41 | radiation | 20 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 414 | 17.41 | radiation | 20 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 421 | 17.42 | radiation | 40 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 430 | 17.42 | radiation | 40 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 444 | 17.43 | radiation | 40 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 482 | 17.46 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 485 | 17.46 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 496 | 17.47 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 512 | 17.48 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 517 | 17.48 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 518 | 17.48 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 539 | 17.49 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 546 | 17.49 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 561 | 17.50 | radiation | 10 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 589 | 17.50 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 9 | 17 |
| 590 | 17.50 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 615 | 17.51 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 659 | 17.51 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 22 |
| 673 | 17.52 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 0 | NA |
| 676 | 17.52 | atmosphere | 1005 | 43200 | > th | dose independent | no | NA | NA |
| 677 | 17.52 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 694 | 17.52 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 696 | 17.52 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 12 | 14 |
| 717 | 17.52 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 9 | 17 |
| 739 | 17.52 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 749 | 17.52 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 22 |
| 762 | 17.52 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 794 | 17.53 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 14 | NA |
| 797 | 17.53 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 22 | NA |
| 800 | 17.53 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
| 820 | 17.53 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 830 | 17.53 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 16 |
| 850 | 17.53 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 4 | 19 |
| 882 | 17.53 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 21 |
| 886 | 17.53 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 947 | 17.54 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 13 | NA |
| 950 | 17.54 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 1 | NA |
| 954 | 17.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 962 | 17.54 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 967 | 17.54 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 984 | 17.54 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 991 | 17.54 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 999 | 17.54 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 15 |