BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0294700 Os02g0294700|AK069078
(657 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G79090.1 | chr1:29749551-29752945 REVERSE LENGTH=794 432 e-121
AT3G22270.1 | chr3:7874480-7877857 FORWARD LENGTH=783 389 e-108
AT4G14990.1 | chr4:8566259-8569511 REVERSE LENGTH=788 358 7e-99
>AT1G79090.1 | chr1:29749551-29752945 REVERSE LENGTH=794
Length = 793
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 284/663 (42%), Positives = 359/663 (54%), Gaps = 86/663 (12%)
Query: 7 RTSSYPQQEPQYSH--------TEPIPVPKSSFIPYPPSGAVSHSS----PGQPHNMNMP 54
RT YP+ + Q +EPI VPKSSF+ YPP G++S P P+ P
Sbjct: 166 RTKLYPEPQRQLHQDHNQQQFSSEPILVPKSSFVSYPPPGSISPDQRLGHPNIPYQSGGP 225
Query: 55 S---------PPTSFQMPV----SAQNELHHPQFXXXXXXXXXXXXSMAHLDSAGLSTNN 101
P Q+P S Q+ + PQF L NN
Sbjct: 226 QMGSPNFSPFPNLQPQLPSMHHGSPQHTGNRPQF------------------RPALPLNN 267
Query: 102 L----QQNALNSGPVRPNGAMLTPGLVQHNLQRPNGLVPPQMLSRHPQHGMAPIQHSPPQ 157
L N N P +G M L Q Q NGL+PPQM P PP
Sbjct: 268 LPPAQWMNRQNMHPGDSSGIMNNAMLQQPPHQ--NGLMPPQM---QGSQNRLPHPMQPP- 321
Query: 158 FSQFHAQMLGPRHPPPKGCQMYNPQRPSQMMSG-FDANLAMPDLSDPRARAMLHHGVHGQ 216
LG H P Q++N SG +D L DL + R + HG
Sbjct: 322 --------LG--HMPGMQPQLFNSHLSRSSSSGNYDGMLGFGDLREVRPGS--GHGNRQN 369
Query: 217 HYLPQ-GFELAGMRMDNGWPRFRSKYMSTPEIENIARMQQAATQINDPYIDDYYHQACLA 275
PQ GF+ R +P FRSKYMS EIENI RMQ AT NDPY+DDYYHQACLA
Sbjct: 370 VRFPQQGFDAGVQRR---YP-FRSKYMSAGEIENILRMQLVATHSNDPYVDDYYHQACLA 425
Query: 276 KKSAGGQLKHHFCPTLIRDPSSRARSKDEPHAYLQVDALGRLPFSSIRRPRPLLDVE-QT 334
KKSAG +LKHHFCP +RD RARS +EPHA+LQV+ALGR+PFSSIRRPRPLL+V+
Sbjct: 426 KKSAGAKLKHHFCPNHLRDLQQRARSNNEPHAFLQVEALGRVPFSSIRRPRPLLEVDPPN 485
Query: 335 SESSDDVTEKSASKTLDQEPMLAARITIEXXXXXXXXXXXXXXXXQFSQQQDGGLQLRNR 394
S + K K LDQEPMLAAR+ IE +F+Q QDGG QL+ R
Sbjct: 486 SAKFGNAEHKPTDKPLDQEPMLAARVYIEDGLCLLLEVDDIDRFLEFNQLQDGGHQLKQR 545
Query: 395 RXXXXXXXXXXXXXVDPLTPSNNAPLSPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSEL 454
R DPL + N DD +FLR++SLPKGRKLL RYL+L+ GS+L
Sbjct: 546 RQALLQSLAVSLQLGDPL--AKNGQSQSLDDFLFLRVISLPKGRKLLIRYLQLIFPGSDL 603
Query: 455 ARIACMAVFRHLRFIFGNLPSDSSAVETTTKLATAVSTCVVRLELSGLSACLAAIVCSSL 514
RI CMA+FRHLR +FG L SD ++TT KLAT ++ C+ +EL +S CLAA+ CSS
Sbjct: 604 MRIVCMAIFRHLRSLFGVLSSDPDIIKTTNKLATVINLCIQNMELGPVSTCLAAVSCSSE 663
Query: 515 QPPLRPLGHAAGDGASFIIKSVLDTATELLTDQHVASTYSMQNRALWQASFDAFFGLLTE 574
Q PLRPLG GDGAS ++KS+LD A+EL+ A+ ++ ALW+ASF+ FF +L
Sbjct: 664 QAPLRPLGSPVGDGASTVLKSILDRASELIR----ANNFNNAGIALWRASFNEFFNMLMR 719
Query: 575 YCMSKFDSVIHALQTQP--------AVAAVIGREMPVELLRASLPHTNEYQRKQLLGFAQ 626
YC+SK+DS++ +LQ P A I REMP+ELLR+S PH +E Q++ L+ F +
Sbjct: 720 YCISKYDSIMQSLQLPPHFATEISEEAAKAIVREMPIELLRSSFPHIDEQQKRILMEFLK 779
Query: 627 RTV 629
R++
Sbjct: 780 RSM 782
>AT3G22270.1 | chr3:7874480-7877857 FORWARD LENGTH=783
Length = 782
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/636 (38%), Positives = 366/636 (57%), Gaps = 43/636 (6%)
Query: 5 LHRTSSYPQQEPQYSH--TEPIPVPKSSFIPYPPSGAVS-HSSPGQPHNMNMPSPPTSFQ 61
L+RTSSYPQQ+PQ H +EPI +P+S+F +PP G S +SPG H PS P Q
Sbjct: 154 LYRTSSYPQQQPQLQHYNSEPIILPESNFTSFPPPGNRSPQASPGNLHRA--PSLPGGSQ 211
Query: 62 MPVSAQNELHHPQFXXXXXXXX-XXXXSMAHLDSAGLSTNNLQQNALNSGPVRPNGAMLT 120
+ SA + L + F ++ S G + N+ Q + P +G
Sbjct: 212 LTYSAPSPLSNSGFHLSGLSQGPHYGGNLTRYASCGPTLGNMVQPHWVTDPGHLHGDH-- 269
Query: 121 PGLVQHNLQRPNGLVPPQ--MLSRHPQHGMAPIQHSPPQFSQFHAQMLGPRHPPPKGCQM 178
GL+ + +Q+ + +PP+ ++S+H + +Q Q +AQ+ + Q+
Sbjct: 270 SGLLHNLVQQQHQQLPPRNAIMSQH----LLALQQR-----QSYAQLAALQ------SQL 314
Query: 179 YNPQ-RPSQMMSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELAGMRMDNGWPRF 237
Y+ PS+ + + ++ + + ++ H + Q + A + + G +F
Sbjct: 315 YSSYPSPSRKVP-----FGVGEVREHKHKSS-HRSRKNRGLSQQTSDAASQKSETGL-QF 367
Query: 238 RSKYMSTPEIENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSS 297
RSK+M++ EIE+I +MQ + + NDPY++DYYHQA LAKKSAG + HF P ++D
Sbjct: 368 RSKHMTSEEIESILKMQHSNSHSNDPYVNDYYHQAKLAKKSAGSKAISHFYPAQLKDHQP 427
Query: 298 RARSKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTE-KSASKTLDQEPML 356
R+R+ E H + VDALG++ S+RRP LL+V+ + +D + K + K L+QEP++
Sbjct: 428 RSRNSSEQHPQVHVDALGKITLPSVRRPHALLEVDSSPGFNDGSGDHKGSGKHLEQEPLV 487
Query: 357 AARITIEXXXXXXXXXXXXXXXXQFSQQQDGGLQLRNRRXXXXXXXXXXXXXVDPLTPSN 416
AAR+TIE Q ++ QDGG QL+ +R DP + +
Sbjct: 488 AARVTIEDALGVLIDIVDIDRTLQNTRPQDGGAQLKRKRQILLEGLATALQLADPFSKTG 547
Query: 417 -NAPLSPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPS 475
+ ++ DD+VFLRI +LPKGRKLL++YL+L+ G+E AR+ CMA+FRHLRF+FG LPS
Sbjct: 548 QKSGMTAKDDIVFLRIATLPKGRKLLTKYLQLLVPGTENARVVCMAIFRHLRFLFGGLPS 607
Query: 476 DSSAVETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKS 535
D+ A ET + LA AV+ CV ++L LSACLAA+VCSS QPPLRP+G +AGDGAS ++ S
Sbjct: 608 DTLAAETISNLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSAGDGASVVLIS 667
Query: 536 VLDTATELLTDQHVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAA 595
+L+ A E++ V + N LW+ASFD FF LLT+YC SK+D++ Q Q + A
Sbjct: 668 LLERAAEVVVVPRV--MHGNSNDGLWRASFDEFFNLLTKYCRSKYDTIRG--QNQGSAAD 723
Query: 596 V----IGREMPVELLRASLPHTNEYQRKQLLGFAQR 627
V I REMP ELLRASL HTN+ QR LL F ++
Sbjct: 724 VLELAIKREMPAELLRASLRHTNDDQRNYLLNFGRK 759
>AT4G14990.1 | chr4:8566259-8569511 REVERSE LENGTH=788
Length = 787
Score = 358 bits (918), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 196/421 (46%), Positives = 263/421 (62%), Gaps = 24/421 (5%)
Query: 221 QGFELAGMRMDNGWPRFRSKYMSTPEIENIARMQQAATQINDPYIDDYYHQACLAKKSAG 280
Q +LA + ++G +FRSKYM++ EIE+I +MQ + + +DPY++DYYHQA LAKKS+G
Sbjct: 359 QTSDLASQKSESGL-QFRSKYMTSEEIESILKMQHSNSHSSDPYVNDYYHQARLAKKSSG 417
Query: 281 GQLKHHFCPTLIRDPSSRARSKDEPHAYLQVDALGRLPFSSIRRPRPLLDVEQTSESSDD 340
+ K P+ ++D SR+R+ + + VDALG++ SI RPR LL+V D
Sbjct: 418 SRTKPQLYPSHLKDHQSRSRNSSDQQPQVHVDALGKITLPSICRPRALLEV--------D 469
Query: 341 VTEKSASKTLDQEPMLAARITIEXXXXXXXXXXXXXXXXQFSQQQDGGLQLRNRRXXXXX 400
S K L+ EP++AAR+TIE QF++ QDGG QLR +R
Sbjct: 470 SPPSSGHKHLEDEPLVAARVTIEDAFGVLIDIVDIDRTLQFNRPQDGGAQLRRKRQILLE 529
Query: 401 XXXXXXXXVDPLTPSN-NAPLSPNDDLVFLRIVSLPKGRKLLSRYLELVSSGSELARIAC 459
VDP + + L+ DD+VFLRI +LPKGRKLL++YL+L+ G+E+AR+ C
Sbjct: 530 GLATSLQLVDPFSKTGQKTGLTTKDDIVFLRITTLPKGRKLLTKYLQLLVPGTEIARVVC 589
Query: 460 MAVFRHLRFIFGNLPSDSSAVETTTKLATAVSTCVVRLELSGLSACLAAIVCSSLQPPLR 519
MAVFRHLRF+FG LPSDS A ET LA AV+ CV ++L LSACLAA+VCSS QPPLR
Sbjct: 590 MAVFRHLRFLFGGLPSDSLAAETIANLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLR 649
Query: 520 PLGHAAGDGASFIIKSVLDTATELLTDQHVA------STYSMQNRALWQASFDAFFGLLT 573
P+G ++GDGAS ++ S+L+ A E++ VA S + N LW+ASFD FF LLT
Sbjct: 650 PIGSSSGDGASVVLVSLLERAAEVI----VAVVPPRVSNHGNPNDGLWRASFDEFFSLLT 705
Query: 574 EYCMSKFDSVIHALQTQPAVAAV---IGREMPVELLRASLPHTNEYQRKQLLGFAQRTVP 630
+YC SK+++ IH A + I REMP ELLRASL HTNE QR LL + P
Sbjct: 706 KYCRSKYET-IHGQNHDNAADVLELAIKREMPAELLRASLRHTNEDQRNFLLNVGRSASP 764
Query: 631 V 631
V
Sbjct: 765 V 765
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,613,241
Number of extensions: 570399
Number of successful extensions: 2517
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2496
Number of HSP's successfully gapped: 3
Length of query: 657
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 552
Effective length of database: 8,227,889
Effective search space: 4541794728
Effective search space used: 4541794728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)