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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0769000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0191) R2 : 0.0578
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.212 (0.0401) R2dN8 : 0.0746 R2N8 : 0.0578
σ : 0.359
deviance : 59.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.21 0.279 12.3 0.153 0.554 -0.986 -0.255 -0.835 0.206 16.2 20.49 306 -- --
35.4 0.277 12.3 0.133 0.565 -0.673 -0.194 -- 0.199 16.2 20.81 302 -- --
35.38 0.277 12.3 0.148 0.556 -0.9 -- -0.609 0.203 16.2 20.6 305 -- --
35.49 0.277 12.3 0.133 0.56 -0.679 -- -- 0.201 16.2 20.79 286 -- --
46.28 0.317 12.4 -0.0154 -- -0.87 -- 0.49 0.108 -- 35.06 248 -- --
38.45 0.291 12.3 0.268 0.595 -- -0.226 -- 0.256 16.2 -- -- -- --
38.6 0.291 12.3 0.265 0.594 -- -- -- 0.255 16.2 -- -- -- --
46.5 0.318 12.4 0.0658 -- -0.865 -- -- 0.123 -- 47.92 250 -- --
35.92 0.279 12.3 -- 0.549 -0.773 -- -- 0.185 16.2 20.75 286 -- --
57.66 0.355 12.3 0.242 -- -- -- -- 0.239 -- -- -- -- --
40.45 0.298 12.3 -- 0.589 -- -- -- 0.225 16.2 -- -- -- --
46.6 0.318 12.4 -- -- -0.888 -- -- 0.113 -- 73.98 250 -- --
59.2 0.359 12.3 -- -- -- -- -- 0.212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.42 humidity 50.0 270 > th dose dependent rect. 21 9
5 30.24 humidity 50.0 270 > th dose independent rect. 16 19
8 30.38 temperature 15.0 270 > th dose independent rect. 10 7
11 30.50 humidity 90.0 270 < th dose independent rect. 11 6
12 30.50 radiation 1.0 270 > th dose independent rect. 11 6
16 30.55 wind 1.0 270 > th dose independent rect. 16 19
18 30.60 wind 1.0 270 > th dose independent rect. 17 17
22 30.68 wind 9.0 270 < th dose independent rect. 11 6
24 30.77 precipitation 0.1 270 < th dose independent rect. 11 6
25 30.77 precipitation 0.1 270 < th dose dependent rect. 11 6
30 30.81 radiation 1.0 90 < th dose independent sin 16 NA
34 30.82 atmosphere 1015.0 270 < th dose independent rect. 11 6
35 30.82 temperature 10.0 270 > th dose independent rect. 17 18
36 30.83 wind 9.0 270 < th dose independent rect. 17 18
38 30.84 humidity 80.0 270 > th dose independent rect. 21 9
39 30.85 precipitation 0.1 270 < th dose independent rect. 17 18
40 30.85 precipitation 0.1 270 < th dose dependent rect. 17 18
41 30.87 radiation 1.0 90 > th dose independent sin 16 NA
45 30.90 radiation 1.0 90 < th dose dependent sin 16 NA
50 30.93 temperature 20.0 270 > th dose independent rect. 11 18
57 30.98 radiation 20.0 270 < th dose independent rect. 15 10
58 30.98 atmosphere 995.0 270 > th dose independent rect. 17 18
73 31.06 wind 1.0 270 > th dose independent rect. 11 6
74 31.07 temperature 20.0 270 > th dose independent rect. 21 9
81 31.09 temperature 15.0 270 > th dose independent rect. 1 15
83 31.10 atmosphere 995.0 270 > th dose independent rect. 11 6
84 31.10 radiation 1.0 90 > th dose independent rect. 13 6
96 31.12 temperature 15.0 270 > th dose independent rect. 23 17
105 31.22 temperature 20.0 90 > th dose independent rect. 23 19
110 31.24 temperature 20.0 90 > th dose independent rect. 1 17
116 31.31 radiation 10.0 270 < th dose independent rect. 21 9
119 31.33 radiation 20.0 270 < th dose independent rect. 15 8
120 31.33 temperature 10.0 270 > th dose independent rect. 21 9
121 31.33 temperature 30.0 270 < th dose independent rect. 21 9
122 31.33 humidity 50.0 270 > th dose independent rect. 21 9
125 31.33 atmosphere 995.0 270 > th dose independent rect. 21 9
129 31.33 temperature 10.0 270 > th dose independent rect. 6 15
131 31.33 temperature 10.0 270 > th dose dependent rect. 11 6
132 31.34 humidity 50.0 270 > th dose independent rect. 6 15
133 31.34 radiation 40.0 270 < th dose dependent rect. 21 9
138 31.36 temperature 10.0 270 > th dose dependent rect. 12 4
140 31.37 radiation 1.0 270 > th dose independent rect. 13 2
153 31.41 wind 9.0 270 < th dose independent rect. 21 9
154 31.41 temperature 30.0 270 < th dose independent rect. 17 17
163 31.42 radiation 1.0 270 > th dose dependent rect. 12 5
169 31.46 atmosphere 1015.0 270 < th dose dependent rect. 22 7
189 31.48 radiation 10.0 270 < th dose dependent sin 20 NA
190 31.49 wind 9.0 270 < th dose independent rect. 13 2
199 31.50 radiation 40.0 270 < th dose dependent rect. 15 10
204 31.52 temperature 10.0 270 > th dose independent rect. 13 2
206 31.52 atmosphere 1010.0 270 < th dose independent rect. 13 2
208 31.52 precipitation 0.1 270 < th dose independent rect. 13 2
209 31.52 temperature 10.0 270 > th dose independent rect. 15 22
210 31.52 precipitation 0.1 270 < th dose dependent rect. 13 2
212 31.53 precipitation 0.1 270 < th dose independent rect. 6 15
213 31.53 radiation 30.0 270 < th dose dependent rect. 15 8
214 31.53 precipitation 0.1 270 < th dose dependent rect. 6 15
221 31.55 precipitation 0.1 270 < th dose independent rect. 21 9
223 31.55 temperature 10.0 270 > th dose dependent rect. 21 9
225 31.55 precipitation 0.1 270 < th dose dependent rect. 21 9
226 31.56 humidity 50.0 270 > th dose independent rect. 13 2
233 31.59 atmosphere 995.0 270 > th dose independent rect. 13 2
234 31.59 wind 1.0 270 > th dose independent rect. 16 9
236 31.59 wind 9.0 270 < th dose independent rect. 1 15
245 31.63 humidity 50.0 270 > th dose independent rect. 16 7
259 31.67 atmosphere 1015.0 270 < th dose independent rect. 6 15
263 31.68 temperature 10.0 270 > th dose dependent rect. 13 2
277 31.73 precipitation 0.1 270 < th dose independent rect. 15 22
282 31.73 precipitation 0.1 270 < th dose dependent rect. 15 22
299 31.75 humidity 50.0 270 > th dose independent rect. 16 9
323 31.78 radiation 40.0 10 < th dose independent rect. 12 7
325 31.78 atmosphere 995.0 270 > th dose dependent rect. 12 4
329 31.79 temperature 10.0 270 > th dose independent rect. 16 9
333 31.79 atmosphere 1015.0 270 < th dose independent rect. 1 15
339 31.80 wind 9.0 270 < th dose independent rect. 16 9
347 31.81 wind 9.0 270 < th dose independent rect. 23 17
351 31.81 radiation 1.0 270 > th dose dependent sin 16 NA
359 31.83 temperature 20.0 90 > th dose independent rect. 3 15
369 31.84 wind 9.0 270 < th dose independent rect. 6 15
374 31.84 radiation 1.0 270 > th dose dependent rect. 14 1
399 31.86 radiation 10.0 270 < th dose dependent rect. 6 16
400 31.87 radiation 30.0 270 < th dose independent sin 15 NA
401 31.87 wind 1.0 270 > th dose independent rect. 13 2
423 31.89 humidity 90.0 270 < th dose independent rect. 13 2
446 31.90 wind 9.0 270 < th dose independent rect. 15 22
457 31.92 precipitation 0.1 270 < th dose independent rect. 1 15
460 31.92 humidity 90.0 270 < th dose dependent rect. 11 5
462 31.92 precipitation 0.1 270 < th dose dependent rect. 1 15
471 31.94 humidity 50.0 270 > th dose independent rect. 11 5
487 31.96 temperature 30.0 90 < th dose independent rect. 17 10
503 31.98 atmosphere 995.0 270 > th dose independent rect. 1 15
516 31.99 atmosphere 1015.0 270 < th dose independent rect. 23 17
534 32.00 wind 9.0 270 < th dose independent rect. 16 7
589 32.04 temperature 10.0 270 > th dose independent rect. 16 7
605 32.05 humidity 50.0 270 > th dose independent rect. 5 7
623 32.05 atmosphere 995.0 270 > th dose dependent rect. 13 2
627 32.06 precipitation 0.1 270 < th dose independent rect. 16 9
634 32.06 precipitation 0.1 270 < th dose dependent rect. 16 9
665 32.10 atmosphere 1015.0 270 < th dose independent rect. 21 9
695 32.12 radiation 1.0 90 < th dose dependent rect. 16 11
713 32.14 radiation 30.0 270 > th dose independent sin 14 NA
716 32.14 temperature 30.0 90 < th dose independent rect. 17 8
744 32.15 precipitation 0.1 270 < th dose independent rect. 23 17
752 32.15 precipitation 0.1 270 < th dose dependent rect. 23 17
753 32.15 temperature 10.0 270 > th dose dependent rect. 11 18
764 32.17 precipitation 0.1 270 < th dose independent rect. 16 7
767 32.17 precipitation 0.1 270 < th dose dependent rect. 16 7
774 32.18 atmosphere 995.0 270 > th dose independent rect. 23 17
839 32.23 atmosphere 995.0 270 > th dose independent rect. 6 15
860 32.24 wind 9.0 270 < th dose independent rect. 11 18
895 32.28 temperature 10.0 270 > th dose independent rect. 5 6
896 32.28 atmosphere 995.0 270 > th dose independent rect. 5 6
897 32.28 atmosphere 1015.0 270 < th dose independent rect. 5 6
901 32.28 atmosphere 995.0 270 > th dose independent rect. 16 9
902 32.28 temperature 20.0 10 > th dose independent rect. 14 17
931 32.31 precipitation 0.1 270 < th dose independent rect. 5 6
932 32.31 atmosphere 995.0 270 > th dose independent rect. 16 7
938 32.31 precipitation 0.1 270 < th dose dependent rect. 5 6
952 32.33 humidity 60.0 270 > th dose independent rect. 17 4
981 32.36 wind 9.0 270 < th dose independent rect. 5 6
993 32.37 temperature 10.0 1440 > th dose independent rect. 15 4
999 32.37 temperature 10.0 1440 > th dose independent rect. 19 20